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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACGCTGGGAACGAGAAATCCTGCGTTTGGCATGCTAGGGATTTTGCTGATGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAAgtgagttgtgcttgtttttttggagctaataatatttgatgtgtttggtgtttttgtggttctcttgatttagatggatttttgtgattagatgtttgca...

Basic information

species Glycine max
transcript GLYMA10G36500.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G36500.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G07140.1 (Arabidopsis thaliana), 5'ss of exon 3
CACGCTGGGAACGAGAAATCCTGCGTTTGGCATGCTAGGGATTTTGCTGATGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAAgtgagttgtgcttgtttttttggagctaataatattt-gatgtgtttggtgtttttgtggttctcttgatttagatggatttttgtgattagatgtttgca
|||| |||||| || || || || || ||||| ||| | || ||||||||||||||||||||||| ||||| ||||| ||||| ||| |||||||||| |||||||           ||||| |     |  | ||| |   | ||| || |   | |||||   | |||| |         ||     | ||| ||  | 
CACGTTGGGAATGAAAAGTCATGTGTGTGGCACGCTCGTGACTTTGCTGATGGTGAACTCAAGGATGAGCTTTTCTGTATCCGATTTGCTTCTATTGAGAgtgagtatgaaaccgaattttgtaatggcttgtgttttgccttatttagtctcagt-tggtttgatagattcacggattagattactgatggatcttgacc

upper sequence: GLYMA10G36500.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S158_50V6.1 (Physcomitrella patens), 5'ss of exon 3
CACGCTGGGAACGAGAAATCCTGCGTTTGGCATGCTAGGGATTTTGCTGATGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAAgtgagtt--------gtgcttgtttttttggagctaataatatttgatgtgtttggtgtt-----tttgtggttctcttgatttag-atggatttttgtg-attagat-gtttgca------------------------------------
|| || || | ||| ||||| || || ||||||||   |||||   | ||||||||||| ||||| |||||||||||||| ||||||     | |||||||| ||||         |    || |||||  || |  |     | |  |||  | |||||     |||   | | |     || || ||  ||| |||||    || | || |                                       
CATGCGGGTAGCGATAAATCTTGGGTCTGGCATGCCCAGGATTACTCAGATGGTGAACTGAAGGAGGAGCTCTTCTGCATGCGTTTTGGAAATTTTGAAAgtaagttcaaagtttatatccgtgtttttcaagtttttttccgtggcggtgcattgtgttatatatttccaggtttgcgatttgagtatctattgttgtgtgccaggttgtctattgttcgtttctttaatcttttctctattatgaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254315535|gb|GR825344.1|GR825344
EST:     TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAA                         ATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
genomic: TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAAgtgagttgtg ... tctcttttagATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
EST: gi|58015207|gb|CX701949.1|CX701949
EST:     TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAA                         ATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
genomic: TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAAgtgagttgtg ... tctcttttagATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
EST: gi|10843761|gb|BF067030.1|BF067030
EST:     TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAA                         ATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
genomic: TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAAgtgagttgtg ... tctcttttagATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
EST: gi|7924135|gb|AW830161.1|AW830161
EST:     TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAA                         ATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
genomic: TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAAgtgagttgtg ... tctcttttagATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
EST: gi|16105079|gb|BI892819.1|BI892819
EST:     TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAA                         ATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAA
genomic: TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAAgtgagttgtg ... tctcttttagATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAA
EST: gi|254315536|gb|GR825345.1|GR825345
EST:     TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAA                         ATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
genomic: TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAAgtgagttgtg ... tctcttttagATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
EST: gi|254322065|gb|GR837479.1|GR837479
EST:     TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAA                         ATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
genomic: TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAAgtgagttgtg ... tctcttttagATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
EST: gi|26045879|gb|CA783312.1|CA783312
EST:     TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAA                         ATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
genomic: TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAAgtgagttgtg ... tctcttttagATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
EST: gi|9984280|gb|BE658388.1|BE658388
EST:     TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAA                         ATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
genomic: TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAAgtgagttgtg ... tctcttttagATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
EST: gi|58019537|gb|CX706279.1|CX706279
EST:     TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAA                         ATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
genomic: TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAAgtgagttgtg ... tctcttttagATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
EST: gi|9985899|gb|BE659905.1|BE659905
EST:     TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTC-TTCTATTGAAA                         ATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
genomic: TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAAgtgagttgtg ... tctcttttagATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
EST: gi|18040952|gb|BM309246.1|BM309246
EST:     TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAA                         ATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
genomic: TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAAgtgagttgtg ... tctcttttagATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
EST: gi|7042320|gb|AW472214.1|AW472214
EST:     TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAA                         ATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAA
genomic: TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAAgtgagttgtg ... tctcttttagATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAA
EST: gi|192330809|gb|FK021596.1|FK021596
EST:     CTTCTGCATCCGTTTTCCTTCTATTGAAA                         ATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
genomic: CTTCTGCATCCGTTTTCCTTCTATTGAAAgtgagttgtg ... tctcttttagATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
EST: gi|254322064|gb|GR837478.1|GR837478
EST:     TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAA                         ATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
genomic: TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAAgtgagttgtg ... tctcttttagATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
EST: gi|9985900|gb|BE659906.1|BE659906
EST:     TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAA                         ATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
genomic: TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAAgtgagttgtg ... tctcttttagATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
EST: gi|5510355|gb|AI856680.1|AI856680
EST:     TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAA                         ATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
genomic: TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAAgtgagttgtg ... tctcttttagATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
EST: gi|6567189|gb|AW234804.1|AW234804
EST:     TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTGTCCTTCTATTGAAA                         ATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
genomic: TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAAgtgagttgtg ... tctcttttagATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
EST: gi|24205315|gb|BU964568.1|BU964568
EST:     TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAA                         ATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG
genomic: TGGTGAACTCAAGGACGAGCTCTTCTGCATCCGTTTTCCTTCTATTGAAAgtgagttgtg ... tctcttttagATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAAACACAAAAGG