Sequence
atgc intronic sequence ATGC exonic sequenceGCATTAGGTTATGTGCATGGAGCTCAAGTTGTCCATGCATCTGAACCAATCCATGGTCGTTTGAGgtaaggttagacatttcaacaccatatcagttgtttttccagtacttattatgaaattgcaacatttaagaaaataaatatacctaaaacaaaaatatcatctgaaggtttcgtatccattccttccctctttttttaactatctctttgtactttacag
Basic information
species | Glycine max |
transcript | GLYMA10G35580.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G35580.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0019g04170.t01 (Vitis vinifera), 5'ss of exon 4
GCATTAGGTTATGTGCATGGAGCTCAAGTTGTCCATGCATCTGAACCAATCCATGGTCGTTTGAGgtaaggttagacatttcaacaccatatcagttgtttttccagtacttattatgaaattgcaacatttaagaaaataaatatacctaa---aaca-aaaatatcatctgaaggtttcgtatccattccttccctctttttttaactatctctttgtactttacag
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GCTTTGGGATATGTGCATGGCGCTCGAGTTGTCCATGCATCTGAACCAATTCATGGACGCTTGAGgtatggt--gatatttaattgcta----ggttgccttttggttctttttgttcttattg--acaatttagagaactagttttcccattttagcatgagacgcaatttg--------------------------------------------------------
upper sequence: GLYMA10G35580.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0019g04180.t01 (Vitis vinifera), 5'ss of exon 4
GCATTAGGTTATGTGCATGGAGCTCAAGTTGTCCATGCATCTGAACCAATCCATGGTCGTTTGAGgtaaggttagacatttcaacaccatatcagttgtttttccagtacttattatgaaattgcaacatttaagaaaataaatatacctaaaacaaaaatatcatctgaaggtttcgtatccattccttccctctttttttaactatctctttgtactttacag
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GCTCTGGGACATGTGCACGGCGCTGAAATTGTTCATGCACCTGAACCAATCCATGGACGCTTGAGgta--------tacccaattacaattgcaaggttttctagtttgctttcaaaccattcacagatactaaagaaaaatattgaagtgaa-cttagagagcctgtgaaact---------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9258982|gb|BE347129.1|BE347129EST: CATGGAGCTCAAGTTGTCCATGCATCTGAACCAATCCATGGTCGTTTGAGGTAAG
genomic: CATGGAGCTCAAGTTGTCCATGCATCTGAACCAATCCATGGTCGTTT---G--AGgtaaggttag ... tacttt
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCATTAGGTTATGTGCATGGAGCTCAAGTTGTCCATGCATCTGAACCAATCCATGGTCGTTTGAGgtaaggttagacatttcaacaccatatcagttgtttttccagtacttattatgaaattgcaacatttaagaaaataaatatacctaaaacaaaaatatcatctgaaggtttcgtatccattccttccctctttttttaactatctctttgtactttacag
- - - - - - - CATGGA
- - - - - - - - - GGAGCT
- - - - - - - - - - AGCTCA