1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CAAAGTTGGCTCTTTTGTTGACAAAGGTGGGAATCACATTGAAATGGGATTGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGTTGAAGAAGgtaagctgtttttacttccagtcatggtgtgcattcttcttcatctctaaaccctgtactcttcctctctcttttttggccatgaaacctgtaccattgactttattttccatgtgcatttgataacttcttcaatacttggatgactag
species | Glycine max |
transcript | GLYMA10G30220.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGTTGAAGAAG GTGGGTGCAGAAAACAATCTACTTGTGAAGGATCACACTCACACTTTTGTTEST: gi|193532831|gb|FK492833.1|FK492833
genomic: TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGTTGAAGAAGgtaagctgtt ... ggatgactagGTGGGTGCAGAAAACAATCTACTTGTGAAGGATCACACTCACACTTTTGTT
EST: TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGTTGAAGAAG GTGGGTGCAGAAAACAACCTACTTGTGAAGGATCACACTCACACTTTTGTTEST: gi|213589825|gb|DB969618.1|DB969618
genomic: TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGTTGAAGAAGgtaagctgtt ... ggatgactagGTGGGTGCAGAAAACAATCTACTTGTGAAGGATCACACTCACACTTTTGTT
EST: TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGTTGAAGAAG GTGGGTGCAGAAAACAATCTACTTGTGAAGGATCACACTCACACTTTTGTTEST: gi|151401347|gb|EV271161.1|EV271161
genomic: TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGTTGAAGAAGgtaagctgtt ... ggatgactagGTGGGTGCAGAAAACAATCTACTTGTGAAGGATCACACTCACACTTTTGTT
EST: TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGTTGAAGAAG GTGGGTGCAGAAAACAATCTACTTGTGAAGGATCACACTCACACTTTTGTTEST: gi|209717713|gb|BW671531.1|BW671531
genomic: TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGTTGAAGAAGgtaagctgtt ... ggatgactagGTGGGTGCAGAAAACAATCTACTTGTGAAGGATCACACTCACACTTTTGTT
EST: TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGTTGAAGAAG GTGGGTGCAGAAAACAATCTACTTGTGAAGGATCACACTCACACTTTTGTTEST: gi|209702720|gb|BW652763.1|BW652763
genomic: TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGTTGAAGAAGgtaagctgtt ... ggatgactagGTGGGTGCAGAAAACAATCTACTTGTGAAGGATCACACTCACACTTTTGTT
EST: TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGTTGAAGAAG GTGGGTGCAGAAAACAATCTACTTGTGAAGG
genomic: TGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGTTGAAGAAGgtaagctgtt ... ggatgactagGTGGGTGCAGAAAACAATCTACTTGTGAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAAGTTGGCTCTTTTGTTGACAAAGGTGGGAATCACATTGAAATGGGATTGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGATTGTTGAAGAAGgtaagctgtttttacttccagtcatggtgtgcattcttcttcatctctaaaccctgtactcttcctctctcttttttggccatgaaacctgtaccattgactttattttccatgtgcatttgataacttcttcaatacttggatgactag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG