Sequence
atgc intronic sequence ATGC exonic sequenceCAAGCTTTTGGATGAATTTTCCTAAAGAAGGTTCTCAATTGACACCTCCTCATCAATCAGAGGGTTTTAAATGGAAAGATTACTGCCCTATGGTGTTCAGgtaagtattgacacttgtttaggcttatttgtttcgtggggccattgtatcattgatcttactctctagacatgctcataaaccaattctttcttttttt...
Basic information
species | Glycine max |
transcript | GLYMA10G06800.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G06800.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G076392_T02 (Zea mays), 5'ss of exon 2
CAAGCTTTTGGATGAATTTTCCTAAAGAAGGTTCTCAATTGACACCTCCTCATCAATCAGAGGGTTTTAAATGGAAAGATTACTGCCCTATGGTGTTCAGg-----taagtattgacacttgtttaggcttatttgtttcgtggggccattgtatcattgatcttactctctagacatgctcataaaccaattctttcttttttt
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CAAGTTTCTGGATGAACTTCCCCAAAAATGGTTCACGACTTACTCCTTCACATCATGCTGATAATTTTAAATGGAAAGACTACTGCCCAATGGTGTTCAGgtttgttgcgtagtatcccattatcgaggttgtgaacctaa-gcaacttcagtgaaaagaacatgaggccctacagattgtatgagaataacttagtgatc----
upper sequence: GLYMA10G06800.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g04700.t01 (Vitis vinifera), 5'ss of exon 2
CAAGCTTTTGGATGAATTTTCCTAAAGAAGGTTCTCAATTGACACCTCCTCATCAATCAGAGGGTTTTAAATGGAAAGATTACTGCCCTATGGTGTTCAGgtaagtattgacacttgtttaggcttatttgtttcgtggggccattgtatcattgatcttactctctagacatgctcat-aaaccaattctttcttttttt---------
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CCAGTTTTTGGATGAGCTTTCCAAAAGAAGGATCCCAATTGACACCTCCTCATCAATCAGAAGATTTTAAGTGGAAAGACTACTGCCCAATGGTTTTCAGgttagt---------tgttcata-ttaggttttctgcagtgcatttgatttattttatgtaattacttggcatagttgtgaaattcatcatagcttgttccggctgctct
upper sequence: GLYMA10G06800.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S31_309V6.1 (Physcomitrella patens), 5'ss of exon 3
CAAGCTTTTGGATGAATTTTCCTAAAGAAGGTTCTCAATTGACACCTCCTCATCAATCAGAGGGTTTTAAATGGAAAGATTACTGCCCTATGGTGTTCAGgta-agtat------tgacacttgtttaggctt--atttgtttcgtggggccattgtatcattgatcttactctctagacatgctcat-aaaccaattctttcttttttt
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CCAGTATACACATGAATTTTCCGAAGGCTGGGACGCCAATGACCCCTATTCACAGTTCATCTGATTTTAAGTGGAAAGATTACTGTCCTATGGTTTTCAGgtttaatatctctcctgccatgggttgatgtttttatttttttcgtaaactagccccttgcattatggctctatctagccatgtttctcaaagtggttgt----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19934888|gb|BQ079927.1|BQ079927EST: CATCAATCAGAGGGTTTTAAATGGAAAGATTACTGCCCTATGGTATTCAG AAATTTGAGAGAGTTGTTCAAGATTGATGCTGCTGACTATATGATGTCCAT
genomic: CATCAATCAGAGGGTTTTAAATGGAAAGATTACTGCCCTATGGTGTTCAGgtaagtattg ... cctgttgcagAAATTTGAGAGAGTTGTTCAAGATTGATGCTGCTGACTATATGATGTCCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAAGCTTTTGGATGAATTTTCCTAAAGAAGGTTCTCAATTGACACCTCCTCATCAATCAGAGGGTTTTAAATGGAAAGATTACTGCCCTATGGTGTTCAGgtaagtattgacacttgtttaggcttatttgtttcgtggggccattgtatcattgatcttactctctagacatgctcataaaccaattctttcttttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggggc