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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGACTCCACCGGTCCTGGACTCTTCGACGCATTTTTCGCGAGTTTTTCGATGATCCTTGTCAGTGAGgttagcttaacgaagctgcgctgttctcacattcattgctagtgtgttagctagcattatccattttggatctcaagaacaatagttgtttatatatttt...

Basic information

species Glycine max
transcript GLYMA09G38640.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18735262|gb|BM528663.1|BM528663
EST:     GATCCTTGTCAGTGAG                         ATTGGGGATGAGACGTTTATAATAGCAGCTCTCATGGCTATGCGTCACCCT
genomic: GATCCTTGTCAGTGAGgttagcttaa ... tttatgctagATTGGGGATGAGACGTTTATAATAGCAGCTCTCATGGCTATGCGTCACCCT
EST: gi|208096471|gb|GD892164.1|GD892164
EST:     GACTCTTCGACGCATTTTTCGCGAGTTTTTCGATGATCCTTGTCAGTGAG                         ATTGGGGATGAGACGTTTA
genomic: GACTCTTCGACGCATTTTTCGCGAGTTTTTCGATGATCCTTGTCAGTGAGgttagcttaa ... tttatgctagATTGGGGATGAGACGTTTA
EST: gi|192297697|gb|FG992775.1|FG992775
EST:     GACTCTTCGACGCATTTTTCGCGAGTTTTTCGATGATCCTTGTCAGTGAG                         ATTGGGGATGAGACGTTTATAATAGCAGCTCTCATGGCTATGCGTCACCCT
genomic: GACTCTTCGACGCATTTTTCGCGAGTTTTTCGATGATCCTTGTCAGTGAGgttagcttaa ... tttatgctagATTGGGGATGAGACGTTTATAATAGCAGCTCTCATGGCTATGCGTCACCCT
EST: gi|26045883|gb|CA783315.1|CA783315
EST:     GACTCTTCGACGCATTTTTCGCGAGTTTTTCGATGATCCTTGTCAGTGAG                         ATTGGGGATGAGACGTTTATAATAGCAGCTCTCATGGCTATGCGTCACCCT
genomic: GACTCTTCGACGCATTTTTCGCGAGTTTTTCGATGATCCTTGTCAGTGAGgttagcttaa ... tttatgctagATTGGGGATGAGACGTTTATAATAGCAGCTCTCATGGCTATGCGTCACCCT
EST: gi|21889576|gb|BQ742789.1|BQ742789
EST:     GACTCTTCGACGCATTTTTCGCGAGTTTTTCGATGATCCTTGTCAGTGAG                         ATTGGGGATGAGACGTTTATAATAGCAGCTCTCATGGCTATGCGTCACCCT
genomic: GACTCTTCGACGCATTTTTCGCGAGTTTTTCGATGATCCTTGTCAGTGAGgttagcttaa ... tttatgctagATTGGGGATGAGACGTTTATAATAGCAGCTCTCATGGCTATGCGTCACCCT
EST: gi|151405478|gb|EV275292.1|EV275292
EST:     GACTCTTCGACGCATTTTTCGCGAGTTTTTCGATGATCCTTGTCAGTGAG                         ATTGGGGATGAGACGTTTATAATAGCAGCTCTCATGGCTATGCGTCACCCT
genomic: GACTCTTCGACGCATTTTTCGCGAGTTTTTCGATGATCCTTGTCAGTGAGgttagcttaa ... tttatgctagATTGGGGATGAGACGTTTATAATAGCAGCTCTCATGGCTATGCGTCACCCT
EST: gi|26269289|gb|CA820352.1|CA820352
EST:     GACTCTTCGACGCATTTTTCGCGAGTTTTTCGATGATCCTTGTCAGTGAG                         ATTGGGGATGAGACGTTTATAATAGCAG
genomic: GACTCTTCGACGCATTTTTCGCGAGTTTTTCGATGATCCTTGTCAGTGAGgttagcttaa ... tttatgctagATTGGGGATGAGACGTTTATAATAGCAG