1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAGAATCGTCAAGTGAGTTATGAATACGGGCGCTATGGAAACCCAACGACGGTGGTTCTGGAGGAGAAGATAAGgttcgtgtgttttgattttgttattttaattatcttgtaatgtgttttaggtgttggggtcatttgatgaggtttgttgtcattatttaccag
species | Glycine max |
transcript | GLYMA09G37020.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TACGGGCGCTATGGAAACCCAACGACGGTGGTTCTGGAGGAGAAGATAAG TGCATTGGAGGGGGCCGAATCAACTGTGATAATGGCGTCTGGGATGTGTGCEST: gi|120532139|gb|EH260272.1|EH260272
genomic: TACGGGCGCTATGGAAACCCAACGACGGTGGTTCTGGAGGAGAAGATAAGgttcgtgtgt ... tatttaccagTGCATTGGAGGGGGCCGAATCAACTGTGATAATGGCGTCTGGGATGTGTGC
EST: TACGGGCGCTATGGAAACCCAAAGACGGTGGTTCTGGAGGAGAAGATAAG TGCATTGGAGGGGGCCGAAATCAACTGTGATCATGGGGTCTGGGATGTGTGEST: gi|7684793|gb|AW755441.1|AW755441
genomic: TACGGGCGCTATGGAAACCCAACGACGGTGGTTCTGGAGGAGAAGATAAGgttcgtgtgt ... tatttaccagTGCATTGGAGGGGGCCGAA-TCAACTGTGATAATGGCGTCTGGGATGTGTG
EST: TACGGGCGCTATGGAAACCCAACGACGGTGGTACTGGAGGAGAAGATAAT TGCATTGGAGGGGGCCGAATCAACTGTGATAATGGCGACTGTGATGTGTGC
genomic: TACGGGCGCTATGGAAACCCAACGACGGTGGTTCTGGAGGAGAAGATAAGgttcgtgtgt ... tatttaccagTGCATTGGAGGGGGCCGAATCAACTGTGATAATGGCGTCTGGGATGTGTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAATCGTCAAGTGAGTTATGAATACGGGCGCTATGGAAACCCAACGACGGTGGTTCTGGAGGAGAAGATAAGgttcgtgtgttttgattttgttattttaattatcttgtaatgtgttttaggtgttggggtcatttgatgaggtttgttgtcattatttaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA