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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCAGTCTTCGACCACCGGCACTGGAACAATTAATCCTGAGTGGCCTGGCTTTCAGgtttttattggaacagtcttttgctggcattaatggcttatcgttttcattattgtcaagattggattttggttcatccagctcccttattttttag

Basic information

species Glycine max
transcript GLYMA09G34170.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G34170.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0012g02250.t01 (Vitis vinifera), 5'ss of exon 3
GAGCAGTCTTCGACCACCGGCACTGGAACAATTAATCCTGAGTGGCCTGGCTTTCAGgtttttattggaacagtctttt-gctggcattaatggcttatcgtt-----ttcattattgtc----aagattggattttggttcatccagctcccttattttttag-----
||||||||||| |||||  || |||||||| |||||||||| ||| |||| |||||||||  | | |  | |   |    |||   | ||| || ||  | ||     ||  ||||||||    ||   |  || | | || |   |  |   ||  ||||||      
GAGCAGTCTTCAACCACGAGCGCTGGAACAGTTAATCCTGATTGGTCTGGATTTCAGgttcctttagtcaaaacttaaaagcttatactaagggttttccattgttgctttcttattgtcttttaattgtttatgtggcttgacttaattttttttatttttattacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6482300|gb|AW201569.1|AW201569
EST:     CTTCGACCACCGGCACTGGAACAATTAATCCTGAGTGGCCTGGCTTTCAG                         GCATATTCTCCTATACCTCCACATGGTTTCTTGGCATCAAGTCCCCAGGCT
genomic: CTTCGACCACCGGCACTGGAACAATTAATCCTGAGTGGCCTGGCTTTCAGgtttttattg ... tattttttagGCATATTCTCCTATACCTCCACATGGTTTCTTGGCATCAAGTCCCCAGGCT