1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTTCTAAAAGTTCAGAAGAGTGGGACAAGTGAACATCTTCCACCACCCAGGCCTAAAAGAAAAGCTGCCCATCCATATCCTCAAAAAGCTTCCAAAAATGgtcataatctttcaccatttcttttttagtcaatttaagtgcatttatatctgatattttataattgatatctggcag
species | Glycine max |
transcript | GLYMA09G24400.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCCTAAAAGAAAAGCTGCCCATCCATATCCTCAAAAAGCTTCCAAAAATG CTCCTGTACTCTCACAAGTATCCGGACGTTTTCAGTCTTCATCTGCTTTGCEST: gi|15337996|gb|BI498652.1|BI498652
genomic: GCCTAAAAGAAAAGCTGCCCATCCATATCCTCAAAAAGCTTCCAAAAATGgtcataatct ... tatctggcagCTCCTGTACTCTCACAAGTATCCGGACGTTTTCAGTCTTCATCTGCTTTGC
EST: GCCTAAAAGAAAAGCTGCCCATCCATATCCTCAAAAAGCTTCCAAAAATG CTCCTGTACTCTCACAAGTATCCGGACGTTTTCAGTCTTCATCTGCTTTGCEST: gi|254334102|gb|GR849020.1|GR849020
genomic: GCCTAAAAGAAAAGCTGCCCATCCATATCCTCAAAAAGCTTCCAAAAATGgtcataatct ... tatctggcagCTCCTGTACTCTCACAAGTATCCGGACGTTTTCAGTCTTCATCTGCTTTGC
EST: GCCTAAAAGAAAAGCTGCCCATCCATATCCTCAAAAAGCTTCCAAAAATG CTCCTGTACTCTCACAAGTATCCGGACGTTTTCAGTCTTCATCTGCTTTGCEST: gi|6566705|gb|AW234339.1|AW234339
genomic: GCCTAAAAGAAAAGCTGCCCATCCATATCCTCAAAAAGCTTCCAAAAATGgtcataatct ... tatctggcagCTCCTGTACTCTCACAAGTATCCGGACGTTTTCAGTCTTCATCTGCTTTGC
EST: GCCTAAAAGAAAAGCTGCCCATCCATATCCTCAAAAAGCTTCCAAAAATG CTCCTGTACTCTCACAAGTATCCGGGACGTTT-CAGTCTTCATCTGCTTTGEST: gi|193643101|gb|FK588199.1|FK588199
genomic: GCCTAAAAGAAAAGCTGCCCATCCATATCCTCAAAAAGCTTCCAAAAATGgtcataatct ... tatctggcagCTCCTGTACTCTCACAAGTATCCGG-ACGTTTTCAGTCTTCATCTGCTTTG
EST: GCTTAAAAGAAAAGCTGCCCATCCATATCCTCAAAAAGCTTCCAAAAATG CTCCTGTACTCTCACAAGTATCCGGACGTTTTCAGTCTTCATCTGCTTTGC
genomic: GCCTAAAAGAAAAGCTGCCCATCCATATCCTCAAAAAGCTTCCAAAAATGgtcataatct ... tatctggcagCTCCTGTACTCTCACAAGTATCCGGACGTTTTCAGTCTTCATCTGCTTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCTAAAAGTTCAGAAGAGTGGGACAAGTGAACATCTTCCACCACCCAGGCCTAAAAGAAAAGCTGCCCATCCATATCCTCAAAAAGCTTCCAAAAATGgtcataatctttcaccatttcttttttagtcaatttaagtgcatttatatctgatattttataattgatatctggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC