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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGCAGGTTGAGGTGAGCAAGTACACAGAAGGCATGAATGAAAAGGCATTACGACCAAATGGATTACCTAAATCATTAATTCGTTATGATGgtaatatgttgagccatttttagtagtgtgtgagattctgcatttacatataatcatttaatttcatttaccag

Basic information

species Glycine max
transcript GLYMA08G33560.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G33560.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv03s0038g04210.t01 (Vitis vinifera), 5'ss of exon 3
AATGCAGGTTGAGGTGAGCAAGTACACAGAAGGCATGAATGAAAAGGCATTACGACCAAATGGATTACCTAAATCATTAATTCGTTATGATGgtaat-----atgttgagccatttttagtagtgtgtgagatt-ctgcatttacatataatcattta-atttcatttaccag---
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AATGCAGGTCGAGGTCAGCAAATATACAGAAGGTGTGAATGAAAAGGCAGTTCGACCAAATGGATTGCCTCAGTCACTAATCCGTTATGATGgtagttaaacaaatatagccccccaatttggtttcagagatgattatgagtgattctaatttttcatgttttccatgtaaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207830345|gb|GD803325.1|GD803325
EST:     AAAGGCATTACGACCAAATGGATTACCTAAATCATTAATTCGTTATGATG                         CTCGTCAAAAGGAGAAAGCTTTGGGTTCCATCACTGAGGTTGTCCAAACTG
genomic: AAAGGCATTACGACCAAATGGATTACCTAAATCATTAATTCGTTATGATGgtaatatgtt ... catttaccagCTCGTCAAAAGGAGAAAGCTTTGGGTTCCATCACTGAGGTTGTCCAAACTG