1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAGgtatatattgcttgctcatttttggaagatttcttttttttccagtttctttatccatattagctattgtgaatgtgtgtgtcag
species | Glycine max |
transcript | GLYMA08G23930.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGTAAAAACAT-AGGTTCTGCTGCAGCTTCATCTGTTCAG CCCTGC-AGTAATCCTCCTACGACTGEST: gi|298198982|gb|HO042345.1|HO042345
genomic: AGTAAAA-CATCAGGTTCTGCTGCAGCTTCATCTGTTCAGgtatatattg ... tgtgtgtcagCC-TGCCAGTAATCCTCCTACGACTG
EST: AGTAAAACATCAGGTTCTGCCGCAGCTTCATCTGTTCAG CCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCTEST: gi|192332023|gb|FK024539.1|FK024539
genomic: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAGgtatatattg ... tgtgtgtcagCCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
EST: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAG CCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCTEST: gi|16348403|gb|BI973998.1|BI973998
genomic: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAGgtatatattg ... tgtgtgtcagCCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
EST: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAG CCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCTEST: gi|298178394|gb|HO024129.1|HO024129
genomic: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAGgtatatattg ... tgtgtgtcagCCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
EST: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAG CCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCTEST: gi|16105282|gb|BI893022.1|BI893022
genomic: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAGgtatatattg ... tgtgtgtcagCCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
EST: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAG CCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCTEST: gi|151410032|gb|EV279840.1|EV279840
genomic: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAGgtatatattg ... tgtgtgtcagCCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
EST: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAG CCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCTEST: gi|298171945|gb|HO021537.1|HO021537
genomic: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAGgtatatattg ... tgtgtgtcagCCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
EST: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAG CCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCTEST: gi|27446142|gb|CA953265.1|CA953265
genomic: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAGgtatatattg ... tgtgtgtcagCCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
EST: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAG CCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCTEST: gi|298196834|gb|HO041577.1|HO041577
genomic: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAGgtatatattg ... tgtgtgtcagCCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
EST: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAG CCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCTCTCCTEST: gi|298179084|gb|HO027555.1|HO027555
genomic: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAGgtatatattg ... tgtgtgtcagCCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
EST: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAG CCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCTEST: gi|120495849|gb|EH224016.1|EH224016
genomic: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAGgtatatattg ... tgtgtgtcagCCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
EST: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAG CCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
genomic: AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAGgtatatattg ... tgtgtgtcagCCTGCCAGTAATCCTCCTACGACTGTATCAACGTCAAATTCCACCCCTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAGgtatatattgcttgctcatttttggaagatttcttttttttccagtttctttatccatattagctattgtgaatgtgtgtgtcag
- - - - - - - - TGCTGC
- - - - - - - - - CTGCAG
- - - - - - - - - - GCAGCT