1 5' 3' | 2 5' 3' | 3 5' 3' |
AGACTATTGGAGGCTTCCCAAGGATGCCAGATTGAAAGATGTTATAACAGTCATTCGTGCTGATGAGGCTCACCATCGAGATGTGAACCATTTTGCTTCTgtgagtgttctttctcactcgcttaatcatctttttgcttgtcttaaaagttaaaacagcgatgcttcttcagctccaccaacttatccactaaaattgt...
species | Glycine max |
transcript | GLYMA08G07700.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCATTCGTGCTGATGAGGCTCACCATCGAGATGTGAACCATTTTGCTTCT GATATCCACTTTCAAGGTAAAGAACTACGGGAAGCACCGGCTCCTATTGGTEST: gi|209729238|gb|BW663590.1|BW663590
genomic: TCATTCGTGCTGATGAGGCTCACCATCGAGATGTGAACCATTTTGCTTCTgtgagtgttc ... tttcatgcagGATATCCACTTTCAAGGTAAAGAACTACGGGAAGCACCGGCTCCTATTGGT
EST: TCATTCGTGCTGATGAGGCTCACCATCGAGATGTGAACCATTTTGCTTCT GATATCCACTTTCAAGGTAAAGAACTACGGGAAGCACCGGCTCCTATTGGTEST: gi|13478815|gb|BG508158.1|BG508158
genomic: TCATTCGTGCTGATGAGGCTCACCATCGAGATGTGAACCATTTTGCTTCTgtgagtgttc ... tttcatgcagGATATCCACTTTCAAGGTAAAGAACTACGGGAAGCACCGGCTCCTATTGGT
EST: TCATTCGTGCTGATGAGGCTCACCATCGAGATGTGAACCATTTTGCTTCT GATATCCACTTTCAAGGTAAAGAACTACGGGAAGCACCGGCTCCTATTGGTEST: gi|9564743|gb|BE474252.1|BE474252
genomic: TCATTCGTGCTGATGAGGCTCACCATCGAGATGTGAACCATTTTGCTTCTgtgagtgttc ... tttcatgcagGATATCCACTTTCAAGGTAAAGAACTACGGGAAGCACCGGCTCCTATTGGT
EST: TCATTCGTGCTGATGAGGCTCACCATCGAGATGTGAACCATTTTGCTTCT GATATCCACTTTCAAGGTAAAGAACTACGGGAAGCACCGGCTCCTATTGGT
genomic: TCATTCGTGCTGATGAGGCTCACCATCGAGATGTGAACCATTTTGCTTCTgtgagtgttc ... tttcatgcagGATATCCACTTTCAAGGTAAAGAACTACGGGAAGCACCGGCTCCTATTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGACTATTGGAGGCTTCCCAAGGATGCCAGATTGAAAGATGTTATAACAGTCATTCGTGCTGATGAGGCTCACCATCGAGATGTGAACCATTTTGCTTCTgtgagtgttctttctcactcgcttaatcatctttttgcttgtcttaaaagttaaaacagcgatgcttcttcagctccaccaacttatccactaaaattgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctcactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccacc