1 5' 3' | 2 5' 3' | 3 5' 3' |
AACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTCAGGCCAATCCTTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatttttatcttcttgattgaatattggtcccatttgaaagaagataacatagttcatgttatttttttttctggtccactaaactctgtccctttttttggtttatag
species | Glycine max |
transcript | GLYMA08G02840.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACTEST: gi|208154999|gb|GD954932.1|GD954932
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACTEST: gi|208278697|gb|GE078728.1|GE078728
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG GCGTTGTCTCCGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACTEST: gi|208133050|gb|GD928701.1|GD928701
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACTEST: gi|193508309|gb|FK466152.1|FK466152
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACTEST: gi|193424711|gb|FK392030.1|FK392030
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACTEST: gi|21600830|gb|BQ611161.1|BQ611161
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACTEST: gi|22927024|gb|BU544163.1|BU544163
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: TTCACCACTATGATNNTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACTEST: gi|208188630|gb|GD983230.1|GD983230
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: TTCACCACTATGATGGCCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTEST: gi|207700074|gb|GD682089.1|GD682089
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTT
EST: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACTEST: gi|208106037|gb|GD904250.1|GD904250
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACTEST: gi|17401751|gb|BM178533.1|BM178533
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: CACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTTCAGTGACACEST: gi|254321792|gb|GR825109.1|GR825109
genomic: CACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACC-TTCAGTGACAC
EST: GTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACTEST: gi|208221910|gb|GE019886.1|GE019886
genomic: GTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: CACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACTEST: gi|193366186|gb|FK330201.1|FK330201
genomic: CACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: TTGAGCTGAATGTGCCCGAG GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACTEST: gi|208135101|gb|GD928820.1|GD928820
genomic: TTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAG GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACTEST: gi|18721661|gb|BM523349.1|BM523349
genomic: TTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
EST: CAAGTTCCGTCTTGAGCTGAATGTGCCCGAG GCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
genomic: CAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatt ... tggtttatagGCGTTGTCTCTGCTGGATATTTTTGCAGAACAAGACACCTTCAGTGACACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTCAGGCCAATCCTTCACCACTATGATGGTCCCAAGTTCCGTCTTGAGCTGAATGTGCCCGAGgtattttatttttatcttcttgattgaatattggtcccatttgaaagaagataacatagttcatgttatttttttttctggtccactaaactctgtccctttttttggtttatag
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