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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACATACAGCACCCAGATATTCTCATTGGCAGTTCTTTTGTCTAGCATGTTCATTTATAACCAGgttggcacagcctattcaagtctatattttcgttgtataattgcttgtatttttactttttgtttcttggtttttacatctcatgatttatttgcgagtctgttatagagcaagcgtgaaactttattccttcttcttcttgcaacttttgtgaatttcttgctgcaattggaatgctgatgctatttcttttgctcag

Basic information

species Glycine max
transcript GLYMA07G32290.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G32290.2 (Glycine max), 5'ss of exon 3
lower sequence: AT5G46070.1 (Arabidopsis thaliana), 5'ss of exon 3
GGAACATACAGCACCCAGATATTCTCATTGGCAGTTCTTTTGTCTAGCATGTTCATTTATAACCAGgttggcacagcctattcaagtctatattttcgttgtataattgcttgtatttttactttttgtttcttggtttttacatctcatgatttatttgcgagtctgttatagagcaagcgtgaaactttattccttcttcttcttgcaacttttgtgaatttcttgctgcaattggaatgctgatgctatttcttttgctcag
|| || |||||||| || ||||||||||| || ||||||||||| ||||||||| | ||||| |||||| | | |     ||  ||| |  |  ||  ||   |||  ||||   ||| |  | ||  ||||    || |     || ||| ||| ||||   || |||   ||                                                                                           
GGTACCTACAGCACTCAAATATTCTCATTAGCTGTTCTTTTGTCAAGCATGTTCGTGTATAATCAGgtttgaaaaat---tttcagtttgaaacttaatt---taa--gctt---tttgtgatattattttcacacttgtgttgactgatg-tttttttgttggtatgtgtcag-------------------------------------------------------------------------------------------

upper sequence: GLYMA07G32290.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv10s0003g00370.t01 (Vitis vinifera), 5'ss of exon 3
GGAACATACAGCACCCAGATATTCTCATTGGCAGTTCTTTTGTCTAGCATGTTCATTTATAACCAGgttggcacagcctattcaagtctatattttcgttgtataattgcttgtat--ttttactttttgtttcttggtttttacatctcatgatttatttgcgagtctgttatagagcaagcgtgaaactttattccttcttcttcttgcaacttttgtgaatttcttgctgcaattggaatgctgatgctatttcttttgctcag
|||||||||||||| ||||| ||||| ||||| || ||||| ||||| |||||||| || ||||||||||| ||| | |||    |   |  || | |    |  |||| ||||    |||        |||||||  | || | || | ||   |  |||| |  |       | |   ||| || |  | | |  | | | | |        || | ||  ||  |   |    |  |  |  | | | | || |||    ||||
GGAACATACAGCACACAGATTTTCTCCTTGGCTGTCCTTTTATCTAGTATGTTCATATACAACCAGgttggtacatcatat----gctcaagttgtggaca-aggattggttgtgggatttagtagacagtttctttttattgaaatttgat--ctattttgtgttttctcctcacaatcagcatgca-ttgtgtatcatgtccataaattctgttgtatgggttcttgattct--tctgcctatttacgttcttccttccattcag