1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTATAAAGGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtgattatttgttttatttagtggaatttgttctaagtgttttaatatttgcaggatttgctaactatggttatttattgaacag
species | Glycine max |
transcript | GLYMA07G05220.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG GTGGCAAGGTGCACAAAGATTATAAACCCAAATTCTGAAGATGCCAAGTATEST: gi|192302201|gb|FG997281.1|FG997281
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtgattattt ... tattgaacagGTGGCAAGGTGCACAAAGATTATAAACCCAAATTCTGAAGATGCCAAGTAT
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG GTGGCAAGGTGCACAAAGATTATAAACCCAAATTCTGAAGATGCCAAGTATEST: gi|193512879|gb|FK468649.1|FK468649
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtgattattt ... tattgaacagGTGGCAAGGTGCACAAAGATTATAAACCCAAATTCTGAAGATGCCAAGTAT
EST: AGGAGCAGCCTCTTCAG GTGGCAAGGTGCACAAGGATTATAAACCCAAATTCTGAAGATGCCAAGTATEST: gi|16346898|gb|BI972493.1|BI972493
genomic: AGGAGCAGCCTCTTCAGgtgattattt ... tattgaacagGTGGCAAGGTGCACAAAGATTATAAACCCAAATTCTGAAGATGCCAAGTAT
EST: GGAGGAGCAGCCTCTTCAG GTGGCAAGGTGCACAAAGATTATAAACCCAAATTCTGAAGATGCCAAGTATEST: gi|209711453|gb|BW665205.1|BW665205
genomic: GGAGGAGCAGCCTCTTCAGgtgattattt ... tattgaacagGTGGCAAGGTGCACAAAGATTATAAACCCAAATTCTGAAGATGCCAAGTAT
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG GTGGCAAGGTGCACAAAGATTATAAACCCAAATTCTGAAGATGCCAAGTAT
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtgattattt ... tattgaacagGTGGCAAGGTGCACAAAGATTATAAACCCAAATTCTGAAGATGCCAAGTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATAAAGGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtgattatttgttttatttagtggaatttgttctaagtgttttaatatttgcaggatttgctaactatggttatttattgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG