Sequence
atgc intronic sequence ATGC exonic sequenceTGCATCTGGCGCAACTACACCAGGTGGTAGTTCTAGCCAAGGAACTGAAGCTACAAACCAAGTCCTTGGGAAGAGAAAGATACAAGATTTAGTTGCACAGgtttctttgaacttttgtctatgtctctttctttatatgtggttatattttgaatcataatcttctatcctacag
Basic information
species | Glycine max |
transcript | GLYMA07G04200.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G04200.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g62820.1 (Oryza sativa), 5'ss of exon 3
TGCATCTGGCGCAACTACACCAGGTGGTAGTTCTAGCCAAGGAACTGAAGCTACAAACCAAGTCCTTGGGAAGAGAAAGATACAAGATTTAGTTGCACAGgt---------ttctttgaacttttgtctatgtctctttctttatatgtggttatatt-ttgaatcataatcttctatcctacag---------------
| ||| || | ||||| | ||||| ||| | || |||||| | |||| || || ||| | |||||||||||||| ||||||||||| ||| ||||||| | || | | |||| | | | | || | || | | | ||||| ||||| | |
TTTATCAGGTGGAACTATGACTGGTGGAAGTGCAAGTCAAGGAGCAGAAGTAACTAATCAACTTCTTGGGAAGAGAAAAATACAAGATTTGGTTTCACAGgtaacaaataaccttctgggttcattcttatgagcttctgtatcactggtatgatgtgatcgtatcatgatctttgagatttttcttgaaatattagaat
upper sequence: GLYMA07G04200.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G17440.1 (Arabidopsis thaliana), 5'ss of exon 3
TGCATCTGGCGCAACTACACCAGGTGGTAGTTCTAGCCAAGGAACTGAAGCTACAAACCAAGTCCTTGGGAAGAGAAAGATACAAGATTTAGTTGCACAGgtttctttgaacttttgtctatgtctctt-tctttatatgtggttatattttgaatcataatc--ttctatcctacag----------
||| || |||| |||||||||||||| || ||||| ||||| ||||| ||||||||| ||||||| || || |||||||| ||| | ||| | ||||| ||| || || | | ||| | | ||| | | ||| ||| || | |||||| ||
ACAATCGGGTACAACAACACCAGGTGGTAGCTCAAGCCAGGGAACAGAAGCAACAAACCAACTCCTTGGTAAAAGGAAGATACAGGATCTGGTTTCGCAGgtgattttccctcttcaactctatagcttgtttctatcttcttcttcctttagaaatatgtttcattctattgtatcatgatgttcag
upper sequence: GLYMA07G04200.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv09s0002g01420.t01 (Vitis vinifera), 5'ss of exon 3
TGCATCTGGCGCAACTACACCAGGTGGTAGTTCTAGCCAAGGAACTGAAGCTACAAACCAAGTCCTTGGGAAGAGAAAGATACAAGATTTAGTTGCACAGgtttctttgaacttttgtc-tatgtctctttctttatatgtggttatattttgaatcataatcttctatcctacag-------------------------
|||||||| ||||||||||||| || ||||| ||||||||||| ||||| | || ||| | || |||||||||||||| |||||| ||||| ||||||| | ||| ||| | || | ||| | | | | || | |||| ||| || | |
GGCATCTGGGACAACTACACCAGGGGGGAGTTCAAGCCAAGGAACAGAAGCAAGCAATCAACTTCTAGGGAAGAGAAAGATCCAAGATCTAGTTTCACAGgtattcttgtgttttcactacgcgattcctcttttgtct-ttatcatgtcctgaaaatcaatgaaaaatttgatattaaacttttctttttccatgtaattMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7686636|gb|AW757293.1|AW757293EST: CTACAAACCAAGTCCTTGGGAAGAGAAAGATACAAGATTTAGTTGCACAG GTGGATCCACAAGGTAGGCTGGACCCCGAAGTTATAGATCTTCTTTTAGAG
genomic: CTACAAACCAAGTCCTTGGGAAGAGAAAGATACAAGATTTAGTTGCACAGgtttctttga ... tatcctacagGTGGATCCACAAGGTAGGCTGGACCCCGAAGTTATAGATCTTCTTTTAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCATCTGGCGCAACTACACCAGGTGGTAGTTCTAGCCAAGGAACTGAAGCTACAAACCAAGTCCTTGGGAAGAGAAAGATACAAGATTTAGTTGCACAGgtttctttgaacttttgtctatgtctctttctttatatgtggttatattttgaatcataatcttctatcctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA