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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATAAAAATTGTTCGTGGGATAAAGAAATATCGAGAGGCAGCCATGGTAGAAATTGAGGTACTGCAACAGCTTGGGAAACACGATAAAGGTAGCAATCGgtaagtatttttacctgaaacttttcttgttatacatgccagtacgacataccatctttgattccagtgcattggttaaatgggtttattccttgcag

Basic information

species Glycine max
transcript GLYMA06G18530.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G18530.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G24740.2 (Arabidopsis thaliana), 5'ss of exon 3
CCATAAAAATTGTTCGTGGGATAAAGAAATATCGAGAGGCAGCCATGGTAGAAATTGAGGTACTGCAACAGCTTGGGAAACACGATAAAGGTAGCAATCGgtaagtatttttacctgaaacttttcttgt-tat-----acatgccagtacgacataccatcttt---gattccagt--gcattggttaaatgggtttattccttgcag
|  |||||||||| |||||  | |||||||| || ||||| || ||| | ||||||||  | |||||||||||||| ||||| || |||||| |||||||||||||| | |    |||   |||  |  |  ||     |  ||        |   |   | ||    |||||   |  |||  ||||||||   | ||||||||||||
CAGTAAAAATTGTCCGTGGTGTGAAGAAATACCGTGAGGCTGCTATGATTGAAATTGAAATGCTGCAACAGCTTGGTAAACATGACAAAGGTGGCAATCGgtaagtactgtctgttgactttttcttcatgcatcactaatctgatgaagtcaagcatagttttccaagattcttttttgcaaaggttaaatcattgtattccttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192330547|gb|FK021250.1|FK021250
EST:     GAAATTGAGGTACTGCAACAGCTTGGGAAACACGATAAAGGTAGCAATCG                         TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATT
genomic: GAAATTGAGGTACTGCAACAGCTTGGGAAACACGATAAAGGTAGCAATCGgtaagtattt ... ttccttgcagTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATT
EST: gi|15201058|gb|BI424670.1|BI424670
EST:     GAAATTGAGGTACTGCAACAGCTTGGGAAACACGATAAAGGTAGCAATCG                         TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATT
genomic: GAAATTGAGGTACTGCAACAGCTTGGGAAACACGATAAAGGTAGCAATCGgtaagtattt ... ttccttgcagTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATT