1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTAATATGTTTGGATTCTGTGCTGCCTTATTTGGCTGTTTGGCTACATCTACAAAGACTATTCTTGCAGAATCTCTTCTGCATGGATACAAATTTGACAGgtaccatctttttttatggttccattccctttgttgttattatctttgtatttctttttttcctttctccattttttcgtctttctggacttcccagtag...
species | Glycine max |
transcript | GLYMA06G11850.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACAAAGACTATTCTTGCAGAATCTCTTCTGCATGGATACAAATTTGACAG CATAAACACAGTTTATTACATGGCACCTTTTGCAACCATGATCTTGGCGGTEST: gi|13787854|gb|BG650446.1|BG650446
genomic: ACAAAGACTATTCTTGCAGAATCTCTTCTGCATGGATACAAATTTGACAGgtaccatctt ... tgtatctcagCATAAACACAGTTTATTACATGGCACCTTTTGCAACCATGATCTTGGCGGT
EST: ACAAAGACTATTCTTGCAGAATCTCTTCTGCATGGATACAAATTTGACAG CATAAACACAGTTTATTACATGGCACCTTTTGCAACCATGATCTTGGCGCTEST: gi|13791096|gb|BG653687.1|BG653687
genomic: ACAAAGACTATTCTTGCAGAATCTCTTCTGCATGGATACAAATTTGACAGgtaccatctt ... tgtatctcagCATAAACACAGTTTATTACATGGCACCTTTTGCAACCATGATCTTGGCGGT
EST: ACAAAGACTATTCTTGCAGAATCTCTTCTGCATGGATACAAATTTGACAG CATAAACACAGTTTATTACATGGCACCTTTTGCAACCATGATCTTGGCGGTEST: gi|16347232|gb|BI972827.1|BI972827
genomic: ACAAAGACTATTCTTGCAGAATCTCTTCTGCATGGATACAAATTTGACAGgtaccatctt ... tgtatctcagCATAAACACAGTTTATTACATGGCACCTTTTGCAACCATGATCTTGGCGGT
EST: ACAAAGACTATTCTTGCAGAATCTCTTCTGCATGGATACAAATTTGACAG CATAAACACAGTTTATTACATGGCACCTTTTGCAACCATGATCTTGGCGGTEST: gi|254341922|gb|GR853059.1|GR853059
genomic: ACAAAGACTATTCTTGCAGAATCTCTTCTGCATGGATACAAATTTGACAGgtaccatctt ... tgtatctcagCATAAACACAGTTTATTACATGGCACCTTTTGCAACCATGATCTTGGCGGT
EST: ACAAAGACTATTCTTGCAGAATCTCTTCTGCATGGATACAAATTTGACAG CATAAACACAGTTTATTACATGGCACCTTTTGCAACCATGATCTTGGCGGTEST: gi|120529232|gb|EH257366.1|EH257366
genomic: ACAAAGACTATTCTTGCAGAATCTCTTCTGCATGGATACAAATTTGACAGgtaccatctt ... tgtatctcagCATAAACACAGTTTATTACATGGCACCTTTTGCAACCATGATCTTGGCGGT
EST: ACAAAGACTATTCTTGCAGAATCTCTTCTGCATGGATACAAATTTGACAG CATAAACACAGTTTATTACATGGCACCTTTTGCAACCATGATCTTGGCGGTEST: gi|27425361|gb|CA936881.1|CA936881
genomic: ACAAAGACTATTCTTGCAGAATCTCTTCTGCATGGATACAAATTTGACAGgtaccatctt ... tgtatctcagCATAAACACAGTTTATTACATGGCACCTTTTGCAACCATGATCTTGGCGGT
EST: ACAAAGACTATTCTTGCAGAATCTCTTCTGCATGGATACAAATTTGACAG CATAAACACAGTTTATTACATGGCACCTTTTGCAACCATGATCTTGGCGGTEST: gi|9898776|gb|BE607744.1|BE607744
genomic: ACAAAGACTATTCTTGCAGAATCTCTTCTGCATGGATACAAATTTGACAGgtaccatctt ... tgtatctcagCATAAACACAGTTTATTACATGGCACCTTTTGCAACCATGATCTTGGCGGT
EST: ACAAAGACTATTCTTGCAGAATCTCTTCTGCATGGATACAAATTTGACAG CATAAACACAGTTTATTACATGGCACCTTTTGCAACCATGATCTTGGCGGTEST: gi|18039178|gb|BM307472.1|BM307472
genomic: ACAAAGACTATTCTTGCAGAATCTCTTCTGCATGGATACAAATTTGACAGgtaccatctt ... tgtatctcagCATAAACACAGTTTATTACATGGCACCTTTTGCAACCATGATCTTGGCGGT
EST: ACAAAGACTATTCTTGCAGAATCTCTTCTGCATGGATACAAATTTGACAG CATAAACACAGTTTATTACATGGCACCTTTTGCAACCATGATCTTGGCGGTEST: gi|120529302|gb|EH257436.1|EH257436
genomic: ACAAAGACTATTCTTGCAGAATCTCTTCTGCATGGATACAAATTTGACAGgtaccatctt ... tgtatctcagCATAAACACAGTTTATTACATGGCACCTTTTGCAACCATGATCTTGGCGGT
EST: GGATACAAATTTGACAG CATAAACACAGTTTATTACATGGCACCTTTTGCAACCATGATCTTGNCGGT
genomic: GGATACAAATTTGACAGgtaccatctt ... tgtatctcagCATAAACACAGTTTATTACATGGCACCTTTTGCAACCATGATCTTGGCGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTAATATGTTTGGATTCTGTGCTGCCTTATTTGGCTGTTTGGCTACATCTACAAAGACTATTCTTGCAGAATCTCTTCTGCATGGATACAAATTTGACAGgtaccatctttttttatggttccattccctttgttgttattatctttgtatttctttttttcctttctccattttttcgtctttctggacttcccagtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttctcc