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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTATTAGCTACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATCGTTTTCCAGgtatgctaatggcctaatactagattcatttactcttgctgtcgccacctattttgccaaatgctgataattttttctcag

Basic information

species Glycine max
transcript GLYMA06G06850.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G06850.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S60_100V6.1 (Physcomitrella patens), 5'ss of exon 4
ACTATTAGCTACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATCGTTTTCCAGgtatgctaatggcctaatactagattcatttactcttgctgtcgccac-ctattttgccaaatgctgataattttt-tctcag------------------------------------------------------------------------------------------------------------------------------
||||||||||||   |||||||| ||||| || ||||||||||| || |||||||||||||||     ||   |  |   | ||| |   || | |  |||  || ||  | ||| |    |   | ||| | ||  |||| |                                                                                                                              
ACTATTAGCTACTGTGCAGAACGAGTTGTTGGCACTGGATCATTCGGGATCGTTTTCCAGgta-----attatc--accattgatcc--ctattttaactgatgctacgttctttcgtagtagatttatattcttcatctcggacagactgtatgtgaccttctggtatgtatcgcgggatgaaggcatgcggcgcatctgtccacgtctaacaaaagttggctcaggaatagaattgattgaattgcgtgttcactcaaatttatcag

upper sequence: GLYMA06G06850.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ10962 (Selaginella moellendorffii), 5'ss of exon 3
ACTATTAGCTACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATCGTTTTCCAGgtatgctaatggcctaatactagattcatttactcttgctgtcgccacctattttgccaaatgctgataattttttctcag
|| ||||||||  | || ||||| ||||||||||||||||| ||||| ||||| |||||||| ||| ||          ||  | |||||      |   ||  |  ||| ||  ||   |                    
ACGATTAGCTATGTCGCGGAACGTGTTGTAGGAACTGGATCGTTTGGCATCGTCTTCCAGgtgtgcaaact------cgctttaatcattctaggctaacgtttcttcctgttgggcttcacttcag--------------

upper sequence: GLYMA06G06850.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ07923 (Selaginella moellendorffii), 5'ss of exon 4
ACTATTAGCTACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATCGTTTTCCAGgtat-gctaatg-gcctaatactagattcatttactcttgctgtcgccacctattttgcca-aatgctgataattttttctcag
|| || |||||  | || ||||||||||| ||||| || || |||||||||||||||||||||| |||| |      | | | | |        || ||   ||  |  | |  | |     ||||| |               
ACAATCAGCTATGTCGCGGAACGGGTTGTGGGAACGGGCTCTTTTGGAATCGTTTTCCAGgtattgctagtccaaacagtgcaacaaaagcaggcttttatcgtttcttctttctctttgggaatgcag---------------

upper sequence: GLYMA06G06850.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ07216 (Selaginella moellendorffii), 5'ss of exon 4
ACTATTAGCTACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATCGTTTTCCAGgtat-gctaat---ggcctaatactagattcatttactcttgctgtcgccacctattttgccaaatgctgataattttttctcag
|| || |||||  | || ||||||||||| ||||| || || |||||||||||||||||||||| |||| |     |     |  | |  ||     | | | |    |   || ||| |   ||||| |               
ACAATCAGCTATGTCGCGGAACGGGTTGTGGGAACGGGCTCCTTTGGAATCGTTTTCCAGgtattgctagtccaaacagtgcaacaaaagcaggctttatcgtttcttctttctctttgg--gaatgcag---------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7283823|gb|AW596425.1|AW596425
EST:     ACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATCGTTTTCCAG                         GCAAAATGCTTGGAAACTGGGGAGGCAGTGGCAATTAAAAAGGTTTTACAA
genomic: ACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATCGTTTTCCAGgtatgctaat ... tttttctcagGCAAAATGCTTGGAAACTGGGGAGGCAGTGGCAATTAAAAAGGTTTTACAA
EST: gi|5760433|gb|AI965724.1|AI965724
EST:     ACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATCGTTTTCCAG                         GCAAAATGCTTGGAAACTGGGGAGGCAGTGGCAATTAAAAAGGTTTTACAA
genomic: ACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATCGTTTTCCAGgtatgctaat ... tttttctcagGCAAAATGCTTGGAAACTGGGGAGGCAGTGGCAATTAAAAAGGTTTTACAA
EST: gi|213600601|gb|DB960149.1|DB960149
EST:     ACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATCGTTTTCCAG                         GCAAAATGCTTGGAAACTGGGGAGGCAGTGGCAATTAAAAAGGTTTTACAA
genomic: ACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATCGTTTTCCAGgtatgctaat ... tttttctcagGCAAAATGCTTGGAAACTGGGGAGGCAGTGGCAATTAAAAAGGTTTTACAA
EST: gi|6070740|gb|AW100127.1|AW100127
EST:     ACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATCGTTTTCCAG                         GCAAAATGCTTGGAAACTGGGGAGGCAGTGGCACTTAAAAAAGGTTTTACA
genomic: ACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATCGTTTTCCAGgtatgctaat ... tttttctcagGCAAAATGCTTGGAAACTGGGGAGGCAGTGGCAATT-AAAAAGGTTTTACA
EST: gi|298191445|gb|HO038924.1|HO038924
EST:     ACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATCGTTTTCCAG                         GCAAAATGCTTGGAAACTGGGGAGGCAGTGGCAATTAAAAAGGTTTTACAA
genomic: ACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATCGTTTTCCAGgtatgctaat ... tttttctcagGCAAAATGCTTGGAAACTGGGGAGGCAGTGGCAATTAAAAAGGTTTTACAA