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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACAATGCAGGGGTGATGGCGACTCCATTCACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAGgtattatattgcatgtttacctcacataaatgttagatttctctgacctcatttctgcaacatgtctttctaaatgatgtataactgaaagttgttattctctaataatatacaaaattactttgaagattaataatttaatactatttttgcag

Basic information

species Glycine max
transcript GLYMA05G37720.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G37720.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G11410.1 (Arabidopsis thaliana), 5'ss of exon 3
TAACAATGCAGGGGTGATGGCGACTCCATTCACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAGgtattatattgcatgtttacctcacataaatgttagatttc-tctgacctcatttctgcaacatgtctttctaaatgatgtataactgaaagttgttattctctaataatatacaaaattactttgaagattaataatttaatactatttttgcag
 || ||||| ||| | |||||   ||| |||   |||||    ||||| |||||||| ||||| |||||||||||||| |||||          |||||  | | |  ||  |  ||| || ||     |   ||||         ||||         || | |   |   |    |   | |  ||   || ||  ||  | |   |   |||  || |               
CAATAATGCGGGGATTATGGCATGTCCCTTCTTGCTTTCTAGCGACAACATTGAATTACAGTTTGCAACCAATCATTTGGgtat----------gtttagtttagaagaacttatgatctcctccctttttgcttctttgtttgaacttttgcttcatcgtttgaagtatgatgaggaacattttctatgttataaggtttatgttttgtacaatgcttcag--------------

upper sequence: GLYMA05G37720.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0025g03380.t01 (Vitis vinifera), 5'ss of exon 3
TAACAATGCAGGGGTGATGGCGACTCCATTCACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAGgtattatattgcatgtttacctcaca-taaatgttagatttctctgacctcatttctgcaacatgtc-tttctaaatgatgtataactgaaagttgttattctctaataatatacaaaattactttgaagattaataatttaatactatttttgcag
||||||||||||||| ||||| |||||||||   |||||||| ||||| || ||  ||||||| |||||||| |||||||||||  |         ||  || ||| ||  ||||| | |      || || |    | || |     ||| |  |||  |      |  ||    || |                                                         
TAACAATGCAGGGGTTATGGCCACTCCATTCCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAGgtatgtttcattgaagttttctgacagtagttgttataatatgtaaacttcttggtggaaaaaaaaaatttattcatggggagagggtcgaacagcttct---------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37995130|gb|CF806719.1|CF806719
EST:     CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAG                         GCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGNNNNNNNCAGTAG
genomic: CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAGgtattatatt ... atttttgcagGCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGAAAAAAACAGTAG
EST: gi|15813524|gb|BI785799.1|BI785799
EST:     CTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAG                         GCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGNNNNNNNCAGTAG
genomic: CTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAGgtattatatt ... atttttgcagGCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGAAAAAAACAGTAG
EST: gi|209729809|gb|BW658614.1|BW658614
EST:     CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAG                         GCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGNNNNNNNCAGTAG
genomic: CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAGgtattatatt ... atttttgcagGCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGAAAAAAACAGTAG
EST: gi|192308671|gb|FG999738.1|FG999738
EST:     CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAG                         GCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGNNNNNNNCAGTAG
genomic: CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAGgtattatatt ... atttttgcagGCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGAAAAAAACAGTAG
EST: gi|17963402|gb|BM270151.1|BM270151
EST:     CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAG                         GCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGNNNNNNNCAGTAG
genomic: CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAGgtattatatt ... atttttgcagGCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGAAAAAAACAGTAG
EST: gi|254319860|gb|GR830884.1|GR830884
EST:     CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAG                         GCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGNNNNNNNCAGTAG
genomic: CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAGgtattatatt ... atttttgcagGCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGAAAAAAACAGTAG
EST: gi|21256750|gb|BQ453638.1|BQ453638
EST:     CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAG                         GCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGNNNNNNNCAGTAG
genomic: CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAGgtattatatt ... atttttgcagGCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGAAAAAAACAGTAG
EST: gi|19269548|gb|BM885804.1|BM885804
EST:     CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAG                         GCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGNNNNNNNCAGTAG
genomic: CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAGgtattatatt ... atttttgcagGCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGAAAAAAACAGTAG
EST: gi|18040854|gb|BM309148.1|BM309148
EST:     CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAG                         GCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGNNNNNNNCAGTAG
genomic: CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAGgtattatatt ... atttttgcagGCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGAAAAAAACAGTAG
EST: gi|192300987|gb|FG988902.1|FG988902
EST:     CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAG                         GCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGNNNNNNNCAGTAG
genomic: CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAGgtattatatt ... atttttgcagGCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGAAAAAAACAGTAG
EST: gi|7924361|gb|AW830387.1|AW830387
EST:     CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAG                         GCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGNNNNNNNCAGTAG
genomic: CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAGgtattatatt ... atttttgcagGCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGAAAAAAACAGTAG
EST: gi|6070718|gb|AW100105.1|AW100105
EST:     CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAG                         GCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGANAAAAAACAGTA
genomic: CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAGgtattatatt ... atttttgcagGCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGA-AAAAAACAGTA
EST: gi|16348712|gb|BI974307.1|BI974307
EST:     CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAG                         GCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGNNNNNNNCAGTAG
genomic: CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAGgtattatatt ... atttttgcagGCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGAAAAAAACAGTAG
EST: gi|16348170|gb|BI973765.1|BI973765
EST:     CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAG                         GCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGNNNNNNNCAGTAG
genomic: CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAGgtattatatt ... atttttgcagGCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGAAAAAAACAGTAG
EST: gi|7285547|gb|AW598034.1|AW598034
EST:     CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAG                         GCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGNNNNNNNCAGTAG
genomic: CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAGgtattatatt ... atttttgcagGCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGAAAAAAACAGTAG
EST: gi|27426481|gb|CA938001.1|CA938001
EST:     CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAG                         GCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGNNNNNNNCAGTAG
genomic: CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAGgtattatatt ... atttttgcagGCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGAAAAAAACAGTAG
EST: gi|10848080|gb|BF070633.1|BF070633
EST:     CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAG                         GCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGNNNNNNNCAGTAG
genomic: CACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAGgtattatatt ... atttttgcagGCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGAAAAAAACAGTAG