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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGTGGAAGGTAAGGGTGGAGCTACCTGATGCTTATCCTTATAAGTCTCCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTTGATGAGGTgtaagttgtttcactgcaaccatagcttcattgaatcattgtttatatcatatttaagcagcacaattatgctccatgggaagtctattggctgttgcacaaacacattgcaaaactcacttgctcattaatatgattttctctgatgtttag

Basic information

species Glycine max
transcript GLYMA05G37650.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G37650.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G41340.1 (Arabidopsis thaliana), 5'ss of exon 3
GTGTGTGGAAGGTAAGGGTGGAGCTACCTGATGCTTATCCTTATAAGTCTCCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTTGATGAGGTgtaagttgtttcac-tgcaacca--tagcttcattgaatcattgtttatatcatatttaagcagcacaattatgctccatgggaagtctattggctgttgcacaaacacattgcaaaactcacttgctcattaatatgattttctctgatgtttag
||||||||||| |||| || ||||| || ||||||||||||||||| ||||||||| |||| ||  | |  |||||||  |||||||||||||||||  |||||||  ||| |  | ||| |   ||| |   ||| ||||   ||||| |||   ||   || |    ||   |||| | |    |  |                                                                  
GTGTGTGGAAGATAAGAGTTGAGCTTCCAGATGCTTATCCTTATAAATCTCCATCTGTTGGTTTCATTACTAAAATTTATCATCCTAATGTTGATGAACTgtaagtctttttaaattcaatccactagatgttttggatca--atttatttcaatctttttcatc---tttggtctcctttgtttatgcag-----------------------------------------------------------------

upper sequence: GLYMA05G37650.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G63800.1 (Arabidopsis thaliana), 5'ss of exon 3
GTGTGTGGAAGGTAAGGGTGGAGCTACCTGATGCTTATCCTTATAAGTCTCCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTTGATGAGGTgtaagttgtttcactgcaaccatagcttcattgaatcattgtttatatcatatttaagcagcacaattatgctccatgggaagtctattggctgttgcacaaacacattgcaaaactcacttgctcattaatatgattttctctgatgtttag
||||||||||| |||| || || || |||||||||||||||||||| ||||||||| |||| ||  | | |||||| | ||| |||||||| |||||  ||| ||||     |  | | |  ||| |   ||| |  | || |||| |    | |    | |   | |       ||  |     |||      ||| |       || |||                                         
GTGTGTGGAAGATAAGAGTTGAACTTCCTGATGCTTATCCTTATAAATCTCCATCTGTTGGTTTCATTACCAAAATATACCACCCTAATGTCGATGAAATgtgagtt---caatcgaatcagtagatcttttggaggagtgattatgttccttctccaaatcttgagtggtgcttatttg----ttatccctctttgtatgtggttat-gcag----------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58017503|gb|CX704245.1|CX704245
EST:     CCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTTGATGAGGT                         GTCTGGTTCTGTTTGCTTAGATGTTATTAACCAGACTTGGAGTCCCATGTT
genomic: CCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTTGATGAGGTgtaagttgtt ... tgatgtttagGTCTGGTTCTGTTTGCTTAGATGTTATTAACCAGACTTGGAGTCCCATGTT
EST: gi|298184362|gb|HO029575.1|HO029575
EST:     CCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTTGATGAGGT                         GTCTGGTTCTGTTTGCTTAGATGTTATTAACCAGACTTGGAGTCCCATGTT
genomic: CCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTTGATGAGGTgtaagttgtt ... tgatgtttagGTCTGGTTCTGTTTGCTTAGATGTTATTAACCAGACTTGGAGTCCCATGTT
EST: gi|22931743|gb|BU548882.1|BU548882
EST:     CCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTTGATGAGGT                         GTCTGGTTCTGTTTGCTTAGATGTTATTAACCAGACTTGGAGTCCCATGTT
genomic: CCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTTGATGAGGTgtaagttgtt ... tgatgtttagGTCTGGTTCTGTTTGCTTAGATGTTATTAACCAGACTTGGAGTCCCATGTT
EST: gi|298182712|gb|HO031447.1|HO031447
EST:     CCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTTGATGAGGT                         GTCTGGTTCTGTTTGCTTAGATGTTATTAACCAGACTTGGAGTCCCATGTT
genomic: CCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTTGATGAGGTgtaagttgtt ... tgatgtttagGTCTGGTTCTGTTTGCTTAGATGTTATTAACCAGACTTGGAGTCCCATGTT
EST: gi|151394328|gb|EV264199.1|EV264199
EST:     CCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTTGATGAGGT                         GTCTGGTTCTGTTTGCTTAGATGTTATTAACCAGACTTGGAGTCCCATGTT
genomic: CCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTTGATGAGGTgtaagttgtt ... tgatgtttagGTCTGGTTCTGTTTGCTTAGATGTTATTAACCAGACTTGGAGTCCCATGTT
EST: gi|298183606|gb|HO028819.1|HO028819
EST:     CCATCTATTGGCTTTGTCAACAAAATTCTCCATCCTAATGTTGATGAGGT                         GTCTGGTTCTGTTTGCTTAGATGTTATTAACCAGACTTGGAGTCCCATGTT
genomic: CCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTTGATGAGGTgtaagttgtt ... tgatgtttagGTCTGGTTCTGTTTGCTTAGATGTTATTAACCAGACTTGGAGTCCCATGTT