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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAACCATGGCCATTGCAAGGGAGGTGGCAGCAGTGACTCGCCTTGGCATTGAGgtgacaacaatggattttttttatactaatacgtttttgtttcttttgttatagtttttctgctgcatcatctgttgtttgagatcatcatttgactaat...

Basic information

species Glycine max
transcript GLYMA05G32340.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G32340.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G18680.1 (Arabidopsis thaliana), 5'ss of exon 3
ATAACCATGGCCATTGCAAGGGAGGTGGCAGCAGTGACTCGCCTTGGCATTGAGgtgacaa-caatggattttttttatactaatacgtttttgtttcttttgttatagtttttctgctgcatcatctgttg--tttgagatcatcatttgactaat
 | || ||||| ||||||||||| || |||||||||||||| |||||||||||||| |    | |     ||  || | ||      ||| | |||    |||| ||| ||    | |   ||  | |  ||  | ||   ||| | ||    |   
GTTACTATGGCGATTGCAAGGGAAGTTGCAGCAGTGACTCGACTTGGCATTGAGgttattctctaaacgcttcattcaaacattcttgttctagttgtcattgtgataattggatt-caaaattttttagtggatatgtattcagctttgagttc--