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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGTAACAACCGAAATTTGTCTGACAATGTGGCTATCCAACAGAAAATAAAGCTTGCTCGTGATTATACTTTTCTTCTTAACAGTGTACACCATCACAAGgtattgctctctgctgcatttttccttcaaaattcaaatagtcgttttgtttgtgcctgtgggtaagaagtttgattgaacagttattattggtcaaatg...

Basic information

species Glycine max
transcript GLYMA05G29730.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G29730.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0019g03660.t01 (Vitis vinifera), 5'ss of exon 2
CCGTAACAACCGAAATTTGTCTGACAATGTGGCTATCCAACAGAAAATAAAGCTTGCTCGTGATTATACTTTTCTTCTTAACAGTGTACACCATCACAAGgtattgctctctgctgcatttttccttcaaaattcaaatagtcgttttgtttgt-----gcctgtgggtaagaagtttgattgaacagttattattggtcaaatg
 |  || |||||     ||   |||       |||| ||||| ||| ||||| |||| | |||||| |||| ||| ||||||||||| ||||||||||||||||||||||||        |    ||  |  |||   |  || | ||| |        ||   |||   | || || |||  |  |  || | ||| |      
TCAGAAGAACCGTGGACTGCTGGACCTCTCATCTATTCAACAAAAATTAAAGGTTGCCCATGATTACACTTATCTGCTTAACAGTGTGCACCATCACAAGgtattgctctctttctttcctaaatttttatgttctgttt-tcatcttggtaacaagaagcaattggaagaaaacttggatcaattacctagttttgttgt----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58014299|gb|CX701041.1|CX701041
EST:     AGCTTGCTCGTGATTATACTTTTCTTCTTAACAGTGTACACCATCACAAG                         GATTTACTTTTTTCGTACAATATTGCCGTGGATAGGTCAGATGAAGTAAAA
genomic: AGCTTGCTCGTGATTATACTTTTCTTCTTAACAGTGTACACCATCACAAGgtattgctct ... aattttgcagGATTTACTTTTTTCGTACAATATTGCCGTGGATAGGTCAGATGAAGTAAAA
EST: gi|58017628|gb|CX704370.1|CX704370
EST:     AGCTTGCTCGTGATTATACTTTTCTTCTTAACAGTGTACACCATCACAAG                         GATTTACTTTTTTCGTACAATATTGCCGTGGATAGGTCAGATGAAGTAAAA
genomic: AGCTTGCTCGTGATTATACTTTTCTTCTTAACAGTGTACACCATCACAAGgtattgctct ... aattttgcagGATTTACTTTTTTCGTACAATATTGCCGTGGATAGGTCAGATGAAGTAAAA
EST: gi|7327113|gb|AW620911.1|AW620911
EST:     AGCTTGCTCGTGATTATACTTTTCTTCTTAACAGTGTACACCATCACAAG                         GATTTACTTTTTTCGTACAATATTGCCGTGGATAGGTCAGATGAAGTAAAA
genomic: AGCTTGCTCGTGATTATACTTTTCTTCTTAACAGTGTACACCATCACAAGgtattgctct ... aattttgcagGATTTACTTTTTTCGTACAATATTGCCGTGGATAGGTCAGATGAAGTAAAA
EST: gi|51343486|gb|CO984219.1|CO984219
EST:     AGCTTGCTCGTGATTATACTTTTCTTCTTAACAGTGTACACCATCACAAG                         GATTTACTTTTTTCGTACAATATTGCCGTGGATAGGTCAGATGAAGTAAAA
genomic: AGCTTGCTCGTGATTATACTTTTCTTCTTAACAGTGTACACCATCACAAGgtattgctct ... aattttgcagGATTTACTTTTTTCGTACAATATTGCCGTGGATAGGTCAGATGAAGTAAAA