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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGCTTTGAGATGATTGATGCATTTGCTGAGTCACAGGGGATTCCTATGGACACTGTCCATTCCAAAGCCATTTCTGGAAAAGgtttgtctgctgctctctgtttctcttttgatgtttcttgtaattcatgaattttattaggcaaggtggtggtttgttacag

Basic information

species Glycine max
transcript GLYMA05G28940.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G28940.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g00560.t01 (Vitis vinifera), 5'ss of exon 2
GTTGGCTTTGAGATGATTGATGCATTTGCTGAGTCACAGGGGATTCCTATGGACACTGTCCATTCCAAAGCCATTTCTGGAAAAGgtttgtctgctgctctctgtttct-cttttgatgtttcttgtaattcatgaattttattaggca--aggtggtggtttgttacag-----
|| || |||||||||||  |||| |||||||| ||||| |||||||| |||||||| || |||| |||||| || | |||| ||||| |||| ||| |  ||   |  | || || ||   | ||  | | ||| ||||  |||   ||  |  |  || ||  |||        
GTGGGGTTTGAGATGATCAATGCCTTTGCTGAATCACAAGGGATTCCAATGGACACAGTTCATTGCAAAGCAATCTTTGGACAAGgtctgtcagcttcattccactcatgctcttcataaatattccagtacat-aattgcatttatcattaaattttgtttatttatgtctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298197087|gb|HO041830.1|HO041830
EST:     ACAGGGGATTCCTATGGACACTGTCCATTCCAAAGCCATTTCTGGAAAAG                         GTTTTGTTGGTGAAGTTCCTGTTTTTCTTGCAAAGCCTCAAACTTACATGA
genomic: ACAGGGGATTCCTATGGACACTGTCCATTCCAAAGCCATTTCTGGAAAAGgtttgtctgc ... tttgttacagGTTTTGTTGGTGAAGTTCCTGTTTTTCTTGCAAAGCCTCAAACTTACATGA
EST: gi|192313288|gb|FK005060.1|FK005060
EST:     ACAGGGGATTCCTATGGACACTGTCCATTCCAAAGCCATTTCTGGAAAAG                         GTTTTGTTGGTGAAGTTCCTGTTTTTCTTGCAAAGCCTCAAACTTACATGA
genomic: ACAGGGGATTCCTATGGACACTGTCCATTCCAAAGCCATTTCTGGAAAAGgtttgtctgc ... tttgttacagGTTTTGTTGGTGAAGTTCCTGTTTTTCTTGCAAAGCCTCAAACTTACATGA
EST: gi|192316096|gb|FK007157.1|FK007157
EST:     ACAGGGGATTCCTATGGACACTGTCCATTCCAAAGCCATTTCTGGAAAAG                         GTTTTGTTGGTGAAGTTCCTGTTTTTCTTGCAAAGCCTCAAACTTACATGA
genomic: ACAGGGGATTCCTATGGACACTGTCCATTCCAAAGCCATTTCTGGAAAAGgtttgtctgc ... tttgttacagGTTTTGTTGGTGAAGTTCCTGTTTTTCTTGCAAAGCCTCAAACTTACATGA
EST: gi|192313289|gb|FK005061.1|FK005061
EST:     ACAGGGGATTCCTATGGACACTGTCCATTCCAAAGCCATTTCTGGAAAAG                         GTTTTGTTGGTGAAGTTCCTGTTTTTCTTGCAAAGCCTCAAACTTACATGA
genomic: ACAGGGGATTCCTATGGACACTGTCCATTCCAAAGCCATTTCTGGAAAAGgtttgtctgc ... tttgttacagGTTTTGTTGGTGAAGTTCCTGTTTTTCTTGCAAAGCCTCAAACTTACATGA
EST: gi|192316097|gb|FK007158.1|FK007158
EST:     ACAGGGGATTCCTATGGACACTGTCCATTCCAAAGCCATTTCTGGAAAAG                         GTTTTGTTGGTGAAGTTCCTGTTTTTCTTGCAAAGCCTCAAACTTACATGA
genomic: ACAGGGGATTCCTATGGACACTGTCCATTCCAAAGCCATTTCTGGAAAAGgtttgtctgc ... tttgttacagGTTTTGTTGGTGAAGTTCCTGTTTTTCTTGCAAAGCCTCAAACTTACATGA
EST: gi|298169742|gb|HO021102.1|HO021102
EST:     ACAGGGGATTCCTATGGACACTGTCCATTCCAAAGCCATTTCTGGAAAAG                         GTTTTGTTGGTGAAGTTCCTGTTTTTCTTGCAAAGCCTCAAACTTACATGA
genomic: ACAGGGGATTCCTATGGACACTGTCCATTCCAAAGCCATTTCTGGAAAAGgtttgtctgc ... tttgttacagGTTTTGTTGGTGAAGTTCCTGTTTTTCTTGCAAAGCCTCAAACTTACATGA
EST: gi|192323363|gb|FK016374.1|FK016374
EST:     ACAGGGGATTCCTATGGACACTGTCCATTCCAAAGCCATTTCTGGAAAAG                         GTTTTGTTGGTGAAGTTCCTGTTTTTCTTGCAAAGCCTCAAACTTACATGA
genomic: ACAGGGGATTCCTATGGACACTGTCCATTCCAAAGCCATTTCTGGAAAAGgtttgtctgc ... tttgttacagGTTTTGTTGGTGAAGTTCCTGTTTTTCTTGCAAAGCCTCAAACTTACATGA