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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGAATTTGTTGATAGATCGCAGCACTAATGCACTGAAACTTGCAGATTTTGGATTGGCCAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgtttgtgtgctaccttgtactgggttcttaccttggatataattaaactttgaaattaatgggcttatgtactagagaagaaatactcatgcagcatttt...

Basic information

species Glycine max
transcript GLYMA05G25320.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G25320.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g01850.2 (Oryza sativa), 5'ss of exon 4
ACAGAATTTGTTGATAGATCGCAGCACTAATGCACTGAAACTTGCAGATTTTGGATTGGCCAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgt---------ttgtgtgctaccttgtactgggttc------------ttaccttggatataat-taaactttgaaattaatgggcttatgtactagagaagaaatactcatgcagcatttt-----------------
 |||||||| |||||||||||  | |||||| ||||||| |||||||| ||||| || |||||||| ||||||||||||||  | |||||||| ||||||||         |||||| | || || |  |   |||            ||   || |  ||||  |  | |||  | |||       |||  |||||   |  ||  | ||       | |                  
TCAGAATTTATTGATAGATCGGCGTACTAATACACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGCACATTTACTCATGAGgtactatagatttgtgttcaacattttgttttcttcataaagtacatttttttttcgtcataaagttcatttttcatttaccttttctatacactagcacattaactcacaatggatgtctatgggaagtatttttcag

upper sequence: GLYMA05G25320.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g02680.1 (Oryza sativa), 5'ss of exon 3
ACAGAATTTGTTGATAGATCGCAGCACTAATGCACTGAAACTTGCAGATTTTGGATTGGCCAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgt---------ttgtgtgctaccttgtactgggttc-----------ttaccttggatataat-taaactttgaaattaatgggcttatgtactagagaagaaatactcatgcagcatttt-----------------
 |||||||| |||||||||||  | |||||||||||||| |||||||| ||||| || |||||||| ||||||||||||||  | || ||||| || |||||         |||||| | || || |  |   |||           ||   || |  ||||  |  | |||  | |||       |||  |||||   |  ||  | ||       | |                  
TCAGAATTTATTGATAGATCGGCGTACTAATGCACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGCACGTTTACTCACGAGgtactatagatttgtgttcaacattttgttttcttcataaagtacattttttttcgtcataaagttcatttttcatttaccttttctatacactagcacattaactcacaatggatgtctatgggaagtatttttcag

upper sequence: GLYMA05G25320.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g03060.1 (Oryza sativa), 5'ss of exon 3
ACAGAATTTGTTGATAGATCGCAGCACTAATGCACTGAAACTTGCAGATTTTGGATTGGCCAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgtttgtgtgctaccttgtactgggttcttaccttggatataattaaactttgaaattaatgggcttatgtactagagaagaaat-actcatgcagcatttt----
 |||||  || ||||||||||  | || ||  || |||| || || || ||||| ||||||||||| ||||| ||||||||  |||||||||| || |||||   | |   | |  | ||  | || |    | | | |   | |   |||  | |   ||  | |    |||| ||||||    |    |  |    |      
CCAGAACCTGCTGATAGATCGGCGTACCAACTCATTGAAGCTCGCGGACTTTGGGTTGGCCAGGGCATTTGGCATTCCTGTCCGGACATTTACTCACGAGgtacattttacagcccg-acacgtttttcgtttggtacactgtga---tttatagtccttgcacat-cacactacagaagaggggaactgtctaatggtgaaaac

upper sequence: GLYMA05G25320.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G008327_T01 (Zea mays), 5'ss of exon 4
ACAGAATTTGTTGATAGATCGCAGCACTAATGCACTGAAACTTGCAGATTTTGGATTGGCCAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgt-------ttgtgtgctaccttgta---------ctgggttcttaccttggatataattaaactttgaaat-taatgggcttatgtactag-agaagaaatactc-----atgcagcatttt--------------------------------------------------------
 || || || |||||||||||  |||||||||||||||| |||||||| ||||| || |||||||| ||||||||||||||  | |||||||| ||||||||       || ||  ||| ||||           |||  || |    || |  | ||  | | | |||    |       ||||| | |   | ||    ||| |     | | | | ||||                                                        
TCAAAACTTATTGATAGATCGGCGCACTAATGCACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgttatgctctaacttgagaaagggagtctgaattgtcctgttagggaaaaaaatattgtgagggatgccaaagttatggattcccacaatttttacccgaataacgtaaccttttgctgtatattctagtcacattaattcacagtacatatctatggaagtatttttcag

upper sequence: GLYMA05G25320.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G143213_T02 (Zea mays), 5'ss of exon 4
ACAGAATTTGTTGATAGATCGCAGCACTAATGCACTGAAACTTGCAGATTTTGGATTGGCCAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgtttgtgtgctaccttgtactgggttcttaccttggatataa----ttaaactttgaaattaatgggcttatgt-actagagaagaaatactcatgcagcatttt-----------------------------------------------------------------------------------
 ||||| ||||||||||||||  | | |||||||||||| |||||||| ||||| || |||||||| ||||||||||||||  | |||||||| ||||||||   | |||||   ||  ||   | |||| ||||   |       || || | |   ||||  |     || |    || |  |  | | | ||| | |                                                                                        
TCAGAACTTGTTGATAGATCGGCGTAATAATGCACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgctatgctg--cttattgcttaacttgagaaagggagtttgaattatcctattagggaaaaaatattgtgaggggtgccaaaattatggatcccaccgattttatacccatataacataaccttttgttgtctattctagtcatatcaactcaatacatatctatggaagtatttttcag

upper sequence: GLYMA05G25320.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G48750.1 (Arabidopsis thaliana), 5'ss of exon 5
ACAGAATTTGTTGATAGATCGCAGCACTAATGCACTGAAACTTGCAGATTTTGGATTGGCCAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgtttgtgtgctaccttgtactgggttcttaccttggatataattaaactttgaaattaatgggcttatgtactagagaagaaatactcatgcagcatttt--
||||||||||||||| |||||| |||| ||  ||||||| ||||| ||||||||| ||||||| || || || || ||||| ||||||||||| ||||||||          | || | |   |||| ||  ||     | || |||  ||     |    |  ||   ||  || | |     | | | | |  ||     
ACAGAATTTGTTGATTGATCGCCGCACAAACTCACTGAAGCTTGCTGATTTTGGACTGGCCAGAGCATTCGGTATCCCTGTCAGGACATTTACTCATGAGgtac-caaagagctttattccttgttcatatgttcc-cgttatgaaatcttttggctggctgcattccttatgagtgtaatgtaaattaagtattataccac

upper sequence: GLYMA05G25320.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv15s0045g00310.t01 (Vitis vinifera), 5'ss of exon 5
ACAGAATTTGTTGATAGATCGCAGCACTAATGCACTGAAACTTGCAGATTTTGGATTGGCCAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgttt--gtgtgctaccttgtactgggttcttaccttggatataattaaactttgaaattaatgggcttatgtactagagaagaaatactcatgcagcatttt--
 ||||| ||  | ||||||||  | || |||||| | || || ||||| ||||||||||| || || ||||| ||||||||||||||||||||||||||||| |   ||||| | |  ||  ||   |||| |    ||| |  ||   ||||       ||  || | | || ||       | ||      ||   ||||  
CCAGAACTTACTCATAGATCGTCGTACCAATGCATTAAAGCTGGCAGACTTTGGATTGGCAAGAGCATTTGGTATTCCTGTTAGGACATTTACACATGAGgtatcaatgtgcaatcc-gtg-tgacctcttccacatgattt--ttcctctttacttggtatttgcatctttaataatatttgattatcatatcaattttttgc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19054013|gb|BM732680.1|BM732680
EST:     TTGGATTGGCCAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAG                         GTGGTAACACTGTGGTACAGAGCTCCGGAAATTTTGCTTGGATCCCGTCAG
genomic: TTGGATTGGCCAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgtttgtgtgc ... ttgtttgtagGTGGTAACACTGTGGTACAGAGCTCCGGAAATTTTGCTTGGATCCCGTCAG
EST: gi|51335099|gb|CO978965.1|CO978965
EST:     TTGGATTGGCCAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAG                         GTGGTAACACTGTGGTACAGAGCTCCGGAAATTTTGCTTGGATCCCGTCAG
genomic: TTGGATTGGCCAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgtttgtgtgc ... ttgtttgtagGTGGTAACACTGTGGTACAGAGCTCCGGAAATTTTGCTTGGATCCCGTCAG
EST: gi|16996519|gb|BM085891.1|BM085891
EST:     TTGGATTGGCCAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAG                         GTGGTAACACTGTGGTACAGAGCTCCGGAAATTTTGCTTGGATCCCGTCAG
genomic: TTGGATTGGCCAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgtttgtgtgc ... ttgtttgtagGTGGTAACACTGTGGTACAGAGCTCCGGAAATTTTGCTTGGATCCCGTCAG
EST: gi|193577454|gb|FK535767.1|FK535767
EST:     TTGGATTGGCCAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAG                         GTGGTAACACTGTGGTACAGAGCTCCGGAAATTTTGCT
genomic: TTGGATTGGCCAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgtttgtgtgc ... ttgtttgtagGTGGTAACACTGTGGTACAGAGCTCCGGAAATTTTGCT