1 5' 3' | 2 5' 3' | 3 5' 3' |
GCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAGCAATGTTGAAGCTGGGACTGAAACCTGTTACTGGTGTTAGTAGGGTCACAATCAAGAGAACAAAAAATgtgagtcattatatattattgttctttactgtgatctatctggaagatggatggcttctaaccaaattattttatgcattag
species | Glycine max |
transcript | GLYMA04G40550.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGAAACCTGTTACTGGTGTTAGTAGGGTCACAATCAAGAGAACAAAAAAT ATTCTTTTCTTCATCTCAAAACCCGATGTCTTCAAGAGTCCAAATTCTGAGEST: gi|193467996|gb|FK433991.1|FK433991
genomic: TGAAACCTGTTACTGGTGTTAGTAGGGTCACAATCAAGAGAACAAAAAATgtgagtcatt ... tatgcattagATTCTTTTCTTCATCTCAAAACCCGATGTCTTCAAGAGTCCAAATTCTGAG
EST: GAAACCTGTTACTGGTGTTAGTAGGGTCACAATCAAGAGAAACAAAAA-T ATTCTTTTCTTCATCTCAAEST: gi|209720038|gb|BW651107.1|BW651107
genomic: GAAACCTGTTACTGGTGTTAGTAGGGTCACAATCAAGAGAA-CAAAAAATgtgagtcatt ... tatgcattagATTCTTTTCTTCATCTCAA
EST: TGAAACCTGTTACTGGTGTTAGTAGGGTCACAATCAAGAGAACAAAAAAT ATTCTTTTCTTCATCTCAAAACCCGATGTCTTCAAGAGTCCAAATTCTGAGEST: gi|31462171|gb|CD404199.1|CD404199
genomic: TGAAACCTGTTACTGGTGTTAGTAGGGTCACAATCAAGAGAACAAAAAATgtgagtcatt ... tatgcattagATTCTTTTCTTCATCTCAAAACCCGATGTCTTCAAGAGTCCAAATTCTGAG
EST: TGAAACCTGTTACTGGTGTTAGTAGGGTCACAATCAAGAGAACCAAAAAT ATTCTTTTCTTCATCTCAAAACCCGATGTCTTCAAGAGTCCAAATTCTGAGEST: gi|31310248|gb|CD395451.1|CD395451
genomic: TGAAACCTGTTACTGGTGTTAGTAGGGTCACAATCAAGAGAACAAAAAATgtgagtcatt ... tatgcattagATTCTTTTCTTCATCTCAAAACCCGATGTCTTCAAGAGTCCAAATTCTGAG
EST: TGAAACCTGTTACTGGTGTTAGTAGGGTCACAATCAAGAGAACAAAAAAT ATTCTTTTCTTCATCTCAAAACCCGATGTCTTCAAGAGTCCCAATTCTGAGEST: gi|31309197|gb|CD394400.1|CD394400
genomic: TGAAACCTGTTACTGGTGTTAGTAGGGTCACAATCAAGAGAACAAAAAATgtgagtcatt ... tatgcattagATTCTTTTCTTCATCTCAAAACCCGATGTCTTCAAGAGTCCAAATTCTGAG
EST: TGAAACCTGTTACTGGTGTTAGTAGGGTCACAATCAAGAGAACAAAAAAT ATTCTTTTCTTCATCTCAAAACCCGATGTCTTCAAGAGTCCAAATTCTGAGEST: gi|8826871|gb|BE210601.1|BE210601
genomic: TGAAACCTGTTACTGGTGTTAGTAGGGTCACAATCAAGAGAACAAAAAATgtgagtcatt ... tatgcattagATTCTTTTCTTCATCTCAAAACCCGATGTCTTCAAGAGTCCAAATTCTGAG
EST: TGAAACCTGTTACTGGTGTTAGTAGGGTCACAATCAAGAGAACAAAAAAT ATTCTTTTCTTCATCTCAAAACCCGATGTCTTCAAGAGTCCAAATTCTGAGEST: gi|254337610|gb|GR849456.1|GR849456
genomic: TGAAACCTGTTACTGGTGTTAGTAGGGTCACAATCAAGAGAACAAAAAATgtgagtcatt ... tatgcattagATTCTTTTCTTCATCTCAAAACCCGATGTCTTCAAGAGTCCAAATTCTGAG
EST: TGAAACCTGTTACTGGTGTTAGTAGGGTCACAATCAAGAGAACAAAAAAT ATTCTTTTCTTCATCTCAAAACCCGATGTCTTCAAGAGTCCAAATTCTGAGEST: gi|31459753|gb|CD401781.1|CD401781
genomic: TGAAACCTGTTACTGGTGTTAGTAGGGTCACAATCAAGAGAACAAAAAATgtgagtcatt ... tatgcattagATTCTTTTCTTCATCTCAAAACCCGATGTCTTCAAGAGTCCAAATTCTGAG
EST: TGAAACCTGTTACTGGTGTTAGTAGGGTCACAATCAAGAGAACTGTAAAT ATTCTTTTCTTCATCTCAAAACCCGATGTCTTCAAGAGTCCAAATTCTGAGEST: gi|120534441|gb|EH262574.1|EH262574
genomic: TGAAACCTGTTACTGGTGTTAGTAGGGTCACAATCAAGAGAACAAAAAATgtgagtcatt ... tatgcattagATTCTTTTCTTCATCTCAAAACCCGATGTCTTCAAGAGTCCAAATTCTGAG
EST: TGAAACCTGTTACTGGTGTTAGTAGGGTCACAATCAAGAGAACAAAAAAT ATTCTTTTCTTCATCTCAAAACCCGATGTCTTCAAGAGTCCAAATTCTGAGEST: gi|4307759|gb|AI444093.1|AI444093
genomic: TGAAACCTGTTACTGGTGTTAGTAGGGTCACAATCAAGAGAACAAAAAATgtgagtcatt ... tatgcattagATTCTTTTCTTCATCTCAAAACCCGATGTCTTCAAGAGTCCAAATTCTGAG
EST: TGAAACCTGTTACTGGTGTTAGTAGGGTCACAATCAAGAGAACAAAAAAT ATTCTTTTCTTCATCTCAAAACCCGATGTCTTCAAGAGTCCAAATTCTGAGEST: gi|208129433|gb|GD928901.1|GD928901
genomic: TGAAACCTGTTACTGGTGTTAGTAGGGTCACAATCAAGAGAACAAAAAATgtgagtcatt ... tatgcattagATTCTTTTCTTCATCTCAAAACCCGATGTCTTCAAGAGTCCAAATTCTGAG
EST: AACCTAGTTAACTAGGTGTTAGTAGGGTCACAATCAAGAGAACAAAAAAT ATTCTTTTCTTCATCTCAAAACCCGATGTCTTCAAGAGTCCAAATTCTGAGEST: gi|31476067|gb|CD418095.1|CD418095
genomic: AACCT-GTTA-CT-GGTGTTAGTAGGGTCACAATCAAGAGAACAAAAAATgtgagtcatt ... tatgcattagATTCTTTTCTTCATCTCAAAACCCGATGTCTTCAAGAGTCCAAATTCTGAG
EST: TGAAACCTGTTACTGGTGTTAGTAGGGTCACAATCAAGAGAACCATAAAT ATTCTTTTCTTCATCTCCAAACCCGATGTCTTCAAGAGTCCCAATTCTGAGEST: gi|14009231|gb|BG725835.1|BG725835
genomic: TGAAACCTGTTACTGGTGTTAGTAGGGTCACAATCAAGAGAACAAAAAATgtgagtcatt ... tatgcattagATTCTTTTCTTCATCTCAAAACCCGATGTCTTCAAGAGTCCAAATTCTGAG
EST: TGAAACCTGTTACTGGTGTTAGTAGGGTCACAATCAAGAGAACAAAAAAT ATTCTTTTCTTCATCTCAAAACCCGATGTCTTCAAGAGTCCAAATTCTGAGEST: gi|31468820|gb|CD410848.1|CD410848
genomic: TGAAACCTGTTACTGGTGTTAGTAGGGTCACAATCAAGAGAACAAAAAATgtgagtcatt ... tatgcattagATTCTTTTCTTCATCTCAAAACCCGATGTCTTCAAGAGTCCAAATTCTGAG
EST: TGAAACCTGTTACTGGTGTTAGTAGGGTCACAATCAAGAGAACAAAAAAT ATTCTTTTCTTCATCTCAAAACCCGATGTCTTCAAGAGTCCAAATTCTGAGEST: gi|31463939|gb|CD405967.1|CD405967
genomic: TGAAACCTGTTACTGGTGTTAGTAGGGTCACAATCAAGAGAACAAAAAATgtgagtcatt ... tatgcattagATTCTTTTCTTCATCTCAAAACCCGATGTCTTCAAGAGTCCAAATTCTGAG
EST: GAGAACAAAAAAT ATTCTTTTCTTCATCTCAAAACCCGATGTCTTCAAGAGTCCAAATTCTGAG
genomic: GAGAACAAAAAATgtgagtcatt ... tatgcattagATTCTTTTCTTCATCTCAAAACCCGATGTCTTCAAGAGTCCAAATTCTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAGCAATGTTGAAGCTGGGACTGAAACCTGTTACTGGTGTTAGTAGGGTCACAATCAAGAGAACAAAAAATgtgagtcattatatattattgttctttactgtgatctatctggaagatggatggcttctaaccaaattattttatgcattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA