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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTCTACTATGCTGGGTTGAAATTAACCTCCCCAACCTTCTCATGTGCAATGAGCAACGTGCTTCCTGCCATGACTTTTGTTATGGCAGTATTATGCCGgtaaaattaagataattccaatagaaaagttatttttgaaggttttttttctttttttctgtctctaaggattggattatgtgaaaag

Basic information

species Glycine max
transcript GLYMA04G15590.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G15590.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0084g00090.t01 (Vitis vinifera), 5'ss of exon 3
ACTTCTACTATGCTGGGTTGAAATTAACCTCCCCAACCTTCTCATGTGCAATGAGCAACGTGCTTCCTGCCATGACTTTTGTTATGGCAGTATTATGCCGgtaaaattaagataattccaatagaaaa--gttatttttgaag-----gttttttttctttttttctgtctctaaggattggattatgtgaaaag------------------------------------
|||| || |||||||| |||||  | || ||||| ||||||||||| |||||||||||  ||||||| |||||||| || || ||||| ||  ||| ||||||  ||||    |||  ||||| | ||   | ||  |          ||  |  || | |||||| |  | |   |  | ||| |  ||                                         
ACTTTTATTATGCTGGTTTGAAGCTGACTTCCCCGACCTTCTCATGCGCAATGAGCAATATGCTTCCGGCCATGACATTCGTCATGGCGGTCATATTCCGgtacgatta--tcaatctcaatatataatcatcatcgtcatgatcgctgtgatcattttatttttcggggtttggtgtattgatcacatgggctaattttgtaacatgtttgacatgatggaattgaaaag