1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AAATTGCTGTAGATTGCTTTTTTGCTATATGGTTTGTTGTTGGAAATGTATGGATTTTTGGAGGACATTCATCTGCTGATCAAGCACCTAACTTATACAGgtatagcctctcagcagctcttacatttagcatgtgtttggtaaaacatttttcaagagaaataatttttcaaaaattctctcatgaagctagcaaaaataaccaattgtttatccaaaccaagttgaacaaaatacacaaataatcttctgattttttagagcttccagattttatctgcttccttttgcttggcag
species | Glycine max |
transcript | GLYMA04G07570.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGGATTTTTGGAGGACATTCATCTGCTGATCAAGCACCTAACTTATACAG GTTATGTGTAGTGTTTCTTACTTTTAGCTGCATCGGTTATGCTATGCCCTTEST: gi|207701551|gb|GD682880.1|GD682880
genomic: TGGATTTTTGGAGGACATTCATCTGCTGATCAAGCACCTAACTTATACAGgtatagcctc ... tgcttggcagGTTATGTGTAGTGTTTCTTACTTTTAGCTGCATCGGTTATGCTATGCCCTT
EST: TGGATTTTTGGAGGACATTCATCTGCTGATCAAGCACCTAACTTATACAG GTTATGTGTAGTGTTTCTTACTTTTAGCTGCATCGGTTATGCTATGCCCTTEST: gi|192303661|gb|FG995983.1|FG995983
genomic: TGGATTTTTGGAGGACATTCATCTGCTGATCAAGCACCTAACTTATACAGgtatagcctc ... tgcttggcagGTTATGTGTAGTGTTTCTTACTTTTAGCTGCATCGGTTATGCTATGCCCTT
EST: TGGATTTTTGGAGGACATTCATCTGCTGATCAAGCACCTAACTTATACAG GTTATGTGTAGTGTTTCTTACTTTTAGCTGCATCGGTTATGCTATGCCCTTEST: gi|192311756|gb|FK003589.1|FK003589
genomic: TGGATTTTTGGAGGACATTCATCTGCTGATCAAGCACCTAACTTATACAGgtatagcctc ... tgcttggcagGTTATGTGTAGTGTTTCTTACTTTTAGCTGCATCGGTTATGCTATGCCCTT
EST: TTTTTGGAGGACATTCATCTGCTGATCAAGCACCTAACTTATACAG GTTATGTGTAGTGTTTCTTACTTTTAGCTGCATCGGTTATGCTATGCCCTTEST: gi|192311755|gb|FK003588.1|FK003588
genomic: TTTTTGGAGGACATTCATCTGCTGATCAAGCACCTAACTTATACAGgtatagcctc ... tgcttggcagGTTATGTGTAGTGTTTCTTACTTTTAGCTGCATCGGTTATGCTATGCCCTT
EST: TTTTTGGAGGACATTCATCTGCTGATCAAGCACCTAACTTATACAG GTTATGTGTAGTGTTTCTTACTTTTAGCTGCATCGGTTATGCTATGCCCTT
genomic: TTTTTGGAGGACATTCATCTGCTGATCAAGCACCTAACTTATACAGgtatagcctc ... tgcttggcagGTTATGTGTAGTGTTTCTTACTTTTAGCTGCATCGGTTATGCTATGCCCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATTGCTGTAGATTGCTTTTTTGCTATATGGTTTGTTGTTGGAAATGTATGGATTTTTGGAGGACATTCATCTGCTGATCAAGCACCTAACTTATACAGgtatagcctctcagcagctcttacatttagcatgtgtttggtaaaacatttttcaagagaaataatttttcaaaaattctctcatgaagctagcaaaaataaccaattgtttatccaaaccaagttgaacaaaatacacaaataatcttctgattttttagagcttccagattttatctgcttccttttgcttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT