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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTATTAGTTACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATTGTTTTCCAGgtatgttaatggcttaatactagattcatttactcttgctgtctccacctattctgccaaaatgctgataactttttcttag

Basic information

species Glycine max
transcript GLYMA04G06760.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G06760.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 3
ACTATTAGTTACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATTGTTTTCCAGgtatgttaatggcttaatactagattcatttactcttgctgtctccacctattctgccaaaatgctgataact---ttttcttag
|| || |||||||||||||| || ||||| || || || ||||||||||||||||| ||||||  |  ||   |||||  |  |  |  ||  | |   | ||     || |       |  |  || |  ||   || | ||||
ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATTGTTTTTCAGgtacatggata--ttaattatgcaaactatttgtgtcaatatcattttctttatatttcatgtcttggttcctcgcttctgttag

upper sequence: GLYMA04G06760.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ07923 (Selaginella moellendorffii), 5'ss of exon 4
ACTATTAGTTACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATTGTTTTCCAGgtat-gttaatg-gcttaatactagattcatttactcttgctgtctccacctattctgccaaaatgctgataactttttcttag
|| || || ||  | || ||||||||||| ||||| || || |||||||| ||||||||||||| | || |      | | | | |        || ||   || ||  | |  |||     ||||| |               
ACAATCAGCTATGTCGCGGAACGGGTTGTGGGAACGGGCTCTTTTGGAATCGTTTTCCAGgtattgctagtccaaacagtgcaacaaaagcaggcttttatcgtttcttctttctctttgggaatgcag---------------

upper sequence: GLYMA04G06760.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ07216 (Selaginella moellendorffii), 5'ss of exon 4
ACTATTAGTTACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATTGTTTTCCAGgtat-gttaatg-gcttaatactagattcatttactcttgctgtctccacctattctgccaaaatgctgataactttttcttag
|| || || ||  | || ||||||||||| ||||| || || |||||||| ||||||||||||| | || |      | | | | |        || ||   || ||  | |  |||     ||||| |               
ACAATCAGCTATGTCGCGGAACGGGTTGTGGGAACGGGCTCCTTTGGAATCGTTTTCCAGgtattgctagtccaaacagtgcaacaaaagcaggct-ttatcgtttcttctttctctttgggaatgcag---------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213587779|gb|DB955641.1|DB955641
EST:     ACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATTGTTTTCCAG                         GCAAAATGCTTGGAAACTGGGGAGGCAGTGGCAATTAAAAAGGTTTTGCAA
genomic: ACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATTGTTTTCCAGgtatgttaat ... tttttcttagGCAAAATGCTTGGAAACTGGGGAGGCAGTGGCAATTAAAAAGGTTTTGCAA
EST: gi|207719120|gb|GD700301.1|GD700301
EST:     CATGGCAGAACCGGGTTGTAGGAACTGGATCATTTGGAATTGTTTTCCAG                         GCAAAATGCTTGGAAACTGGGGAGGCAGTGGCAATTAAAAAGGTTTTACAA
genomic: CATGGCAGAA-CGGGTTGTAGGAACTGGATCATTTGGAATTGTTTTCCAGgtatgttaat ... tttttcttagGCAAAATGCTTGGAAACTGGGGAGGCAGTGGCAATTAAAAAGGTTTTGCAA
EST: gi|213595436|gb|DB968484.1|DB968484
EST:     ACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATTGTTTTCCAG                         GCAAAATGCTTGGAAACTGGGGAGGCAGTGGCAATTAAAAAGGTTTTGCAA
genomic: ACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATTGTTTTCCAGgtatgttaat ... tttttcttagGCAAAATGCTTGGAAACTGGGGAGGCAGTGGCAATTAAAAAGGTTTTGCAA
EST: gi|13125153|gb|BG315723.1|BG315723
EST:     ACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATTGTTTTCCAG                         GCAAAATGCTTGGAAACTGGGGAGGCAGTGGCAATTAAAAAGGTTTTGCAA
genomic: ACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATTGTTTTCCAGgtatgttaat ... tttttcttagGCAAAATGCTTGGAAACTGGGGAGGCAGTGGCAATTAAAAAGGTTTTGCAA
EST: gi|213605463|gb|DB966956.1|DB966956
EST:     ACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATTGTTTTCCAG                         GCAAAATGCTTGGAAACTGGGGAGGCAGTGGCAATTAAAAAGGTTTTGCAA
genomic: ACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATTGTTTTCCAGgtatgttaat ... tttttcttagGCAAAATGCTTGGAAACTGGGGAGGCAGTGGCAATTAAAAAGGTTTTGCAA
EST: gi|209716661|gb|BW654294.1|BW654294
EST:     ACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATTGTTTTCCAG                         GCAAAATGCTTGGAAACTGGGGAGGCAGTGGCAATTAAAAAGGTTTTGCAA
genomic: ACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATTGTTTTCCAGgtatgttaat ... tttttcttagGCAAAATGCTTGGAAACTGGGGAGGCAGTGGCAATTAAAAAGGTTTTGCAA