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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATATGGTATTAGAAATTCAACGGAGAATGACCAAGGAAAATGTGTTATTTGCTTGTCAGAGCCCCGAGATACAATTGTCCTTCCCTGCCGGCATATGgtatatttgcagcttccctttttgaatgatattttgtgattagttgatagaatgatgctgatgtgatggtaggcatcaatatcataaccaattttatcaa...

Basic information

species Glycine max
transcript GLYMA03G33770.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G33770.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0040g01940.t01 (Vitis vinifera), 5'ss of exon 2
GATATATGGTATTAGAAATTCAACGGAGAATGACCAAGGAAAA---TGTGTTATTTGCTTGTCAGAGCCCCGAGATACAATTGTCCTTCCCTGCCGGCATATGgtatatttgc-agcttccctttttgaatgatattttgtgattagttgatagaatgatgctgatgtgatggtaggcatcaatatcataaccaat-tttatcaa
    | || |  | |  |||        ||||| | |||||||   |||||||| |||||||| || || || || |||| |||||||||||| || |||||||||  |     | |||   | |||    |||   | || || |  |||   |  ||    |   | |       ||    |    |  ||| | ||  |  |
---CTCTGTTGATGGTGATTTTGACAGCAATGATCCAGGAAAAGAATGTGTTATCTGCTTGTCGGAACCTCGGGACACAACTGTCCTTCCCTGTCGACATATGgtaagtgcattatcttgtttatttttgggatggct-gtaataaaatgaggaagcgagaagggc-taaaatagcccaatggttagctgcccagtattccttga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401562|gb|EV271376.1|EV271376
EST:     TTTGCTTGTCAGAGCCCCGAGATACAATTGTCCTTCCCTGCCGGCATATG                         TGTATGTGTAGCGGATGTGCAAAGGATTCTAGGTTCCAGACAGATAGATGC
genomic: TTTGCTTGTCAGAGCCCCGAGATACAATTGTCCTTCCCTGCCGGCATATGgtatatttgc ... gtatttgcagTGTATGTGTAGCGGATGTGCAAAGGATTCTAGGTTCCAGACAGATAGATGC
EST: gi|193367546|gb|FK329600.1|FK329600
EST:     TTTGCTTGTCAGAGCCCCGAGATACAATTGTCCTTCCCTGCCGGCATATG                         TGTATGTGTAGCGGATGTGCAAAGGATTCTAGGTTCCAGACAGATAGATGC
genomic: TTTGCTTGTCAGAGCCCCGAGATACAATTGTCCTTCCCTGCCGGCATATGgtatatttgc ... gtatttgcagTGTATGTGTAGCGGATGTGCAAAGGATTCTAGGTTCCAGACAGATAGATGC