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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATTCTTCTAGAATCACGGGAAAGACCTGGTGGCCGAATTCACACTGATTACTCATTTGGCTTTCCTGTTGACCTTGGTGCATCGTGgtaaaccttacactctttgttctcctttttttattttttcatgttgacaagaatgtggcatttctccattttttagtattaaaaatggatgactgtgattcag

Basic information

species Glycine max
transcript GLYMA02G45140.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G45140.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os04g53190.1 (Oryza sativa), 5'ss of exon 4
GTTATTCTTCTAGAATCACGGGAAAGACCTGGTGGCCGAATTCACACTGATTACTCATTTGGCTTTCCTGTTGACCTTGGTGCATCGTGgtaaaccttacactctttgttctcctttttttattttttc---atgttgacaagaatgtggcatttctccattttttagtattaaaaatggatgactgtgat--tcag
||| ||||||||||||| || || ||    |||||  ||||||||||||||||||| ||||||||||||||||| || || ||||| |||| |   |    |||| ||      |||| | | || ||    ||| || ||| | | |  | |    ||||| |||   ||  |       |   |||||   ||||
GTTGTTCTTCTAGAATCTCGTGACAGGATAGGTGGTAGAATTCACACTGATTACTCTTTTGGCTTTCCTGTTGATCTGGGAGCATCCTGgtgaggttc---ctctctgacaatattttctgaattatttgaaatggtggcaaaagtttatc-tggaaccattatttttaatccacttccattttgtgtgagcatcag

upper sequence: GLYMA02G45140.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os04g53195.1 (Oryza sativa), 5'ss of exon 3
GTTATTCTTCTAGAATCACGGGAAAGACCTGGTGGCCGAATTCACACTGATTACTCATTTGGCTTTCCTGTTGACCTTGGTGCATCGTGgtaaaccttacactctttgttctcctttttttattttttc---atgttgacaagaatgtggcatttctccattttttagtattaaaaatggatgactgtgattcag
||| ||||||||||||| || || ||    |||||  ||||||||||||||||||| ||||||||||||||||| || || ||||| |||| |   |    |||| ||      |||| | | || ||    ||| || ||| |                                                   
GTTGTTCTTCTAGAATCTCGTGACAGGATAGGTGGTAGAATTCACACTGATTACTCTTTTGGCTTTCCTGTTGATCTGGGAGCATCCTGgtgaggttc---ctctctgacaatattttctgaattatttgaaatggtggcaaaag--------------------------------------------------

upper sequence: GLYMA02G45140.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G59050.1 (Arabidopsis thaliana), 5'ss of exon 2
-----------GTTATTCTTCTAGAATCACGGGAAAGACCTGGTGGCCGAATTCACACTGATTACTCATTTGGCTTTCCTGTTGACCTTGGTGCATCGTGgtaa-accttacactctttgttctcctttttttattttttcatgttgacaagaatgtggcatttctccattttttagtattaaaaatggatgactgtgattcag
           ||| || |  | || || || || |||  |||||| ||| |||||||||||||||||||||| ||||| ||||| || |||||||| |||||| | | |     |||    ||   ||||| | |  ||  ||||    |   | || |||   | |     | || | ||    |   |||| |        
CTTCCTTTCAGGTTGTTGTATTGGAGTCTCGTGACAGAATTGGTGGACGAGTTCACACTGATTACTCATTTGGTTTTCCAGTTGATCTCGGTGCATCTTGgtaatatcatggctccttcaacctatctttttcactgattgctgtttg-gatcttttgtcatcgatgc-caactaagcaatatcgttttgtgacag--------

upper sequence: GLYMA02G45140.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G43020.1 (Arabidopsis thaliana), 5'ss of exon 3
GTTATTCTTCTAGAATCACGGGAAAGACCTGGTGGCCGAATTCACACTGATTACTCATTTGGCTTTCCTGTTGACCTTGGTGCATCGTGgtaaaccttacactctttgttctcctttttttattttttcatgttgacaagaatgtggcatttctccattttttag-tattaaaaatggatgactgtgattcag
|||||  | || || || || || |||  |||||| ||| |||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |      ||||||  ||         | |  ||  ||| ||    |  | |||  |||    |  |||  | ||  | |     ||   | ||   |||
GTTATGGTACTGGAGTCCCGTGACAGAATTGGTGGACGAGTTCACACTGATTACTCATTTGGTTTTCCTGTTGATCTTGGTGCATCATGgtaatctcacggctctttcatcc--------tgtcattagatgatgttttggttttggtttttggttaactttaggctaacacagcaacatcgttatgtcacag

upper sequence: GLYMA02G45140.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0028g01120.t01 (Vitis vinifera), 5'ss of exon 3
GTTATTCTTCTAGAATCACGGGAAAGACCTGGTGGCCGAATTCACACTGATTACTCATTTGGCTTTCCTGTTGACCTTGGTGCATCGTGgtaaaccttacactctttgttctccttttttta---ttttttcatgttgacaagaatgtggcatttctccattttttagtattaaaaatggatgactgtgattcag
||| ||||  | ||||| || || |||  |||||| ||  |||| ||||||||||||||||| |||||||||||||| || ||||| |||||||| ||   || || | | || ||||  ||     | |  ||     |    |  |   |||      | ||| |  |||  |                    
GTTGTTCTGTTGGAATCGCGTGATAGAATTGGTGGACGGGTTCATACTGATTACTCATTTGGTTTTCCTGTTGACCTGGGAGCATCATGgtaaacttttatcttttagctttctttttgctaaaacctgtggatacctcctgtcaactctaattaaaatctctttcaaaattgtactcaag--------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151411092|gb|EV280903.1|EV280903
EST:     ATTCACACTGATTACTCATTTGGCTTTCCTGTTGACCTTGGTGCATCGTG                         GCTGCATGGAGTTTGCCCAGAGAATCCACTGGCTCCATTGGTTGGGAAGTT
genomic: ATTCACACTGATTACTCATTTGGCTTTCCTGTTGACCTTGGTGCATCGTGgtaaacctta ... tgtgattcagGCTGCATGGAGTTTGCCCAGAGAATCCACTGGCTCCATTGATTGGGAAGTT
EST: gi|19052709|gb|BM731376.1|BM731376
EST:     ATTCACACTGATTACTCATTTGGCTTTCCTGTTGACCTTGGTGCATCGTG                         GCTGCATGGAGTTTGCCCAGAGAATCCACTGGCTCCATTGATTGGGAAGTT
genomic: ATTCACACTGATTACTCATTTGGCTTTCCTGTTGACCTTGGTGCATCGTGgtaaacctta ... tgtgattcagGCTGCATGGAGTTTGCCCAGAGAATCCACTGGCTCCATTGATTGGGAAGTT
EST: gi|254324811|gb|GR834236.1|GR834236
EST:     ATTCACACTGATTACTCATTTGGCTTTCCTGTTGACCTTGGTGCATCGTG                         GCTGCATGGAGTTTGCCCAGAGAATCCACTGGCTCCATTGATTGGGAAGTT
genomic: ATTCACACTGATTACTCATTTGGCTTTCCTGTTGACCTTGGTGCATCGTGgtaaacctta ... tgtgattcagGCTGCATGGAGTTTGCCCAGAGAATCCACTGGCTCCATTGATTGGGAAGTT
EST: gi|15814789|gb|BI787064.1|BI787064
EST:     ATTCACACTGATTACTCATTTGGCTTTCCTGTTGACCTTGGTGCATCGTG                         GCTGCATGGAGTTTGCCCAGAGAATCCACTGGCTCCATTGATTGGGAAGTT
genomic: ATTCACACTGATTACTCATTTGGCTTTCCTGTTGACCTTGGTGCATCGTGgtaaacctta ... tgtgattcagGCTGCATGGAGTTTGCCCAGAGAATCCACTGGCTCCATTGATTGGGAAGTT
EST: gi|213595975|gb|DB966278.1|DB966278
EST:     ATTCACACTGATTACTCATTTGGCTTTCCTGTTGACCTTGGTGCATCGTG                         GCTGCATGGAGTTTGCCCAGAGAATCCACTGGCTCCATTGATTGGGAAGTT
genomic: ATTCACACTGATTACTCATTTGGCTTTCCTGTTGACCTTGGTGCATCGTGgtaaacctta ... tgtgattcagGCTGCATGGAGTTTGCCCAGAGAATCCACTGGCTCCATTGATTGGGAAGTT
EST: gi|209719953|gb|BW666036.1|BW666036
EST:     ATTCACACTGATTACTCATTTGGCTTTCCTGTTGACCTTGGTGCATCGTG                         GCTGCATGGAGTTTGCCCAGAGAATCCACTGGCTCCATTGATTGGGAAGTT
genomic: ATTCACACTGATTACTCATTTGGCTTTCCTGTTGACCTTGGTGCATCGTGgtaaacctta ... tgtgattcagGCTGCATGGAGTTTGCCCAGAGAATCCACTGGCTCCATTGATTGGGAAGTT
EST: gi|21889158|gb|BQ742371.1|BQ742371
EST:     ATTCACACTGATTACTCATTTGGCTTTCCTGTTGACCTTGGTGCATCGTG                         GCTGCATGGAGTTTGCCCAGAGAATCCACTGGCTCCATTGATT
genomic: ATTCACACTGATTACTCATTTGGCTTTCCTGTTGACCTTGGTGCATCGTGgtaaacctta ... tgtgattcagGCTGCATGGAGTTTGCCCAGAGAATCCACTGGCTCCATTGATT
EST: gi|23059794|gb|BU578393.1|BU578393
EST:     ATTCACACTGATTACTCATTTGGCTTTCCTGTTGACCTTGGTGCATCGTG                         GCTGCATGGAGTTTGCCCAGAGAATCCACTGGCTCCATTGATTGGGAAGTT
genomic: ATTCACACTGATTACTCATTTGGCTTTCCTGTTGACCTTGGTGCATCGTGgtaaacctta ... tgtgattcagGCTGCATGGAGTTTGCCCAGAGAATCCACTGGCTCCATTGATTGGGAAGTT