1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GATGAAGTTGTGAAGCTATCACCCCATGCCCGTGCCATCAGAGATGTAGAGGATGAAGAACTGTGGAGCTTTTTCTATGGGATGTCCCCTTGGCAGgtaatttgataaaacttgctttatttgacatactgagtatgttgtttggaatctagtgcaatgatgaagaaggatatctaattgattttactttatag
species | Glycine max |
transcript | GLYMA01G40650.4 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TAGAGGATGAAGAACTGTGGAGCTTTTTCTATGGGATGTCCCCTTGGCAG TTTATACTGATGGTTGCAGCAAGTTCAGTTGGAGAGGAGCTCTTCTACAGGEST: gi|192317383|gb|FK007505.1|FK007505
genomic: TAGAGGATGAAGAACTGTGGAGCTTTTTCTATGGGATGTCCCCTTGGCAGgtaatttgat ... tactttatagTTTATACTGATGGTTGCAGCAAGTTCAGTTGGAGAGGAGCTCTTCTACAGG
EST: TAGAGGATGAAGAACTGTGGAGCTTTTTCTATGGGATGTCCCCTTGGCAG TTTATACTGATGGTTGCAGCAAGTTCAGTTGGAGAGGAGCTCTTCTACAGGEST: gi|27809063|gb|CB063485.1|CB063485
genomic: TAGAGGATGAAGAACTGTGGAGCTTTTTCTATGGGATGTCCCCTTGGCAGgtaatttgat ... tactttatagTTTATACTGATGGTTGCAGCAAGTTCAGTTGGAGAGGAGCTCTTCTACAGG
EST: TAGAGGATGAAGAACTGTGGAGCTTTTTCTATGGGATGTCCCCTTGGCAG TTTATACTGATGGTTGCAGCCAGTTCAGTTGGAGAAGAGCTCTTCTACEST: gi|7693502|gb|AW761594.1|AW761594
genomic: TAGAGGATGAAGAACTGTGGAGCTTTTTCTATGGGATGTCCCCTTGGCAGgtaatttgat ... tactttatagTTTATACTGATGGTTGCAGCAAGTTCAGTTGGAGAGGAGCTCTTCTAC
EST: TAGAGGATGAAGAACTGTGGAGCTTTTTCTATGGGATGTCCCCTTGGCAG TTTATACTGATGGTTGCAGCAAGTTCAGTTGGAGAGGAGCTCTTCTACAGGEST: gi|151400500|gb|EV270314.1|EV270314
genomic: TAGAGGATGAAGAACTGTGGAGCTTTTTCTATGGGATGTCCCCTTGGCAGgtaatttgat ... tactttatagTTTATACTGATGGTTGCAGCAAGTTCAGTTGGAGAGGAGCTCTTCTACAGG
EST: TAGAGGATGAAGAACTGTGGAGCTTTTTCTATGGGATGTCCCCTTGGCAG TTTATACTGATGGTTGCAGCAAGTTCAGTTGGAGAGGAGCTCTTCTACAGG
genomic: TAGAGGATGAAGAACTGTGGAGCTTTTTCTATGGGATGTCCCCTTGGCAGgtaatttgat ... tactttatagTTTATACTGATGGTTGCAGCAAGTTCAGTTGGAGAGGAGCTCTTCTACAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGAAGTTGTGAAGCTATCACCCCATGCCCGTGCCATCAGAGATGTAGAGGATGAAGAACTGTGGAGCTTTTTCTATGGGATGTCCCCTTGGCAGgtaatttgataaaacttgctttatttgacatactgagtatgttgtttggaatctagtgcaatgatgaagaaggatatctaattgattttactttatag
- - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT