Sequence
atgc intronic sequence ATGC exonic sequenceTTCTTTGGGTAAATCTTATCATGGATACTCTGGGAGCACTAGCCCTGGCAACTGAACCACCAACTGATCACCTCATGGATCGATCCCCAGTGGGTCGAAGgtcagagtttttatttttctgattattattgggtactacagatcatggcatttcatttgtttgctatattattgtagggttgcacagtgtttggaaaatt...
Basic information
species | Glycine max |
transcript | GLYMA15G18180.1 |
intron # | 27 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G18180.1 (Glycine max), 5'ss of exon 27
lower sequence: AT4G29900.1 (Arabidopsis thaliana), 5'ss of exon 29
TTCTTTGGGTAAATCTTATCATGGATACTCTGGGAGCACTAGCCCTGGCAACTGAACCACCAACTGATCACCTCATGGATCGATCCCCAGTGGGTCGAAGgtcagagtttttatttttctgattattattgggtactacagatcatggcatttcatttgtttgctatattattgtagggttgcacagtgtttggaaaatt-------------
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TCCTTTGGGTCAATCTTATAATGGATACTCTTGGGGCTCTTGCTTTAGCCACTGAGCCACCAACCGATCACTTAATGGATCGAGCGCCTGTTGGCAGAAGgtaccacttcttatcagact--tgagcat-gcgtgttaagtcttgttcaactatagagtgctctcagtttctcttcaatttgcacaataattggatttatcttttgctctcag
upper sequence: GLYMA15G18180.1 (Glycine max), 5'ss of exon 27
lower sequence: AT5G57110.2 (Arabidopsis thaliana), 5'ss of exon 29
TTCTTTGGGTAAATCTTATCATGGATACTCTGGGAGCACTAGCCCTGGCAACTGAACCACCAACTGATCACCTCATGGATCGATCCCCAGTGGGTCGAAGgtcagagtttttat---ttttctgattattattgggtactacagatcatggcattt-catttgtttgctat-attattgtagggttgcacagtgtttggaaaatt
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TTCTCTGGGTTAATCTGATAATGGACACTCTTGGAGCATTGGCTTTGGCTACTGAACCACCCACTGATCACCTCATGGGGAGGCCTCCAGTTGGCAGAAAgtactgttttttccgccttctctcattcaaacttaataaaacatttggttttgtagacatagacttattgttatctttctttgcttcgacttctttttgcag---
upper sequence: GLYMA15G18180.1 (Glycine max), 5'ss of exon 27
lower sequence: Vv11s0052g00320.t01 (Vitis vinifera), 5'ss of exon 30
TTCTTTGGGTAAATCTTATCATGGATACTCTGGGAGCACTAGCCCTGGCAACTGAACCACCAACTGATCACCTCATGGATCGATCCCCAGTGGGTCGAAGgtcagagtttttat--ttttctgattattattgggtact----acagatcatggcatttcatttgtttgctatattattgtagggttgcacagtgtttggaaaatt
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TCCTCTGGGTTAATCTTATCATGGATACTCTTGGAGCACTTGCATTGGCCACTGAACCACCAACAGATCACCTGATGCACAGGCCTCCAGTTGGTCGAAGgtaattttttttttaatgttgggagatccaataaatactgtttataaactaagtggaaaattgggtcagatctgtccctggaggtttgaattgtgcttca------
upper sequence: GLYMA15G18180.1 (Glycine max), 5'ss of exon 27
lower sequence: EFJ22392 (Selaginella moellendorffii), 5'ss of exon 24
TTCTTTGGGTAAATCTTATCATGGATACTCTGGGAGCACTAGCCCTGGCAACTGAACCACCAACTGATCACCTCATGGATCGATCCCCAGTGGGTCGAAGgtcagagtttttatttttctgattattattgggtactacagatcatggcatttcatttgtttgctatattattgtagggttgcacagtgtttggaaaatt
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TGCTTTGGGTAAATCTTATTATGGATACTTTGGGAGCGCTCGCTTTAGCCACTGAACCACCTACAGACGACTTAATGGATAGGCCGCCCGTGGGACGCAGgttagacacgggtgtcttctactc------gagttct-taatgcgtg-catttgttttgtttcag-----------------------------------
upper sequence: GLYMA15G18180.1 (Glycine max), 5'ss of exon 27
lower sequence: EFJ25508 (Selaginella moellendorffii), 5'ss of exon 25
TTCTTTGGGTAAATCTTATCATGGATACTCTGGGAGCACTAGCCCTGGCAACTGAACCACCAACTGATCACCTCATGGATCGATCCCCAGTGGGTCGAAGgtcagagtttttatttttctgattattattgggtactacagatcatggcatttcatttgtttgctatattattgtagggttgcacagtgtttggaaaatt
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TGCTTTGGGTAAATCTTATTATGGATACTTTGGGAGCGCTCGCTTTAGCCACTGAGCCACCTACAGACGACTTAATGGATAGGCCGCCCGTGGGACGCAGgttagacacgggtgtcttctactc------gagttct-taatgcgtg-catttgttttgtttcag-----------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|23729217|gb|BU762697.1|BU762697EST: ACTGAACCACCAACTGATCACCTCATGGATCGATCCCCAGTGGGTCGAAG AGAACCTCTCATAACAAATATTATGTGGAGGAATTTGATGATACAG
genomic: ACTGAACCACCAACTGATCACCTCATGGATCGATCCCCAGTGGGTCGAAGgtcagagttt ... tgcttttcagAGAACCTCTCATAACAAATATTATGTGGAGGAATTTGCTGATACAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCTTTGGGTAAATCTTATCATGGATACTCTGGGAGCACTAGCCCTGGCAACTGAACCACCAACTGATCACCTCATGGATCGATCCCCAGTGGGTCGAAGgtcagagtttttatttttctgattattattgggtactacagatcatggcatttcatttgtttgctatattattgtagggttgcacagtgtttggaaaatt
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