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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCCAGCTTTTTAGATGCAACAATCTGTGTATTTAGTGCTTCAAACCTCAGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAGgtaatctgtttgtttaagaattagttgtctgattgtgtcagctggctggggaagagaattctatgaatttaaagaaaaatgtctaacatgctttagtttc...

Basic information

species Glycine max
transcript GLYMA08G22910.2
intron # 25
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G22910.2 (Glycine max), 5'ss of exon 25
lower sequence: Vv09s0002g08370.t01 (Vitis vinifera), 5'ss of exon 24
TTGCCAGCTTTTTAGATGCAACAATCTGTGTATTTAGTGCTTCAAACCTCAGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAGgtaatctgtttgtt-taagaattagttgt--ctgattgtgtcagctggctggggaagagaattctatgaatttaaagaaaaatgtctaacatgctttagtttc
 |||||| || |||||||||||  |||||||||| |||||| |||| |||||  |||| ||||| || |||||| || | || |||||||| ||||||||||| |   |||| | |  |    || ||    | ||| ||  |  |  |         || | | |||  |||||       ||| | |  |    |  |   
ATGCCAGTTTCTTAGATGCAACTGTCTGTGTATTCAGTGCTGCAAATCTCAGGCTACGATGTCGTATTAATCCTACTGCTTACCTTCCTGCCAGTGTCAGgtatttactttgctctgtgggccaggtgggatttattttgaaaaatctcctttatcttga-tacaatgcttttaagttggtttgtttcaattataattatg--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27427240|gb|CA938760.1|CA938760
EST:     AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAG                         TTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
genomic: AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAGgtaatctgtt ... catgcaacagTTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
EST: gi|208317228|gb|GE113237.1|GE113237
EST:     AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAG                         TTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
genomic: AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAGgtaatctgtt ... catgcaacagTTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
EST: gi|6963505|gb|AW432198.1|AW432198
EST:     AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAG                         TTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
genomic: AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAGgtaatctgtt ... catgcaacagTTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
EST: gi|10845152|gb|BF068313.1|BF068313
EST:     AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAG                         TTCCAACATACAACCACTTGTA-TCGCT
genomic: AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAGgtaatctgtt ... catgcaacagTTCCAACATACAACCACTTGTAATCGCT
EST: gi|15812260|gb|BI784535.1|BI784535
EST:     AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAG                         TTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
genomic: AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAGgtaatctgtt ... catgcaacagTTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
EST: gi|11687500|gb|BF595176.1|BF595176
EST:     AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAG                         TTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
genomic: AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAGgtaatctgtt ... catgcaacagTTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
EST: gi|7233186|gb|AW568535.1|AW568535
EST:     AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAG                         TTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
genomic: AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAGgtaatctgtt ... catgcaacagTTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
EST: gi|26048827|gb|CA785280.1|CA785280
EST:     AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAG                         TTCCAACATACAACCACTTGTAATTGCTGCACACCCACAAGAACCAAATCA
genomic: AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAGgtaatctgtt ... catgcaacagTTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
EST: gi|254339484|gb|GR848148.1|GR848148
EST:     AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAG                         TTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA
genomic: AGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAGgtaatctgtt ... catgcaacagTTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCA