Sequence
atgc intronic sequence ATGC exonic sequenceTGTTGATGAGTGATTCACTTGGTGGTAATGCCAAAACTCTCATGTTTGTGAATGTTTCTCCTGCAGAATCAAATTTGGACGAGACAAATAACTCTCTTATgtatgttctttgtcgttttctttcattataattattttattattgttgagatctcacatcaactagagatctcaacaattaacttgaaaagtgtttctattgttctaacacaattcctctgttatttag
Basic information
species | Glycine max |
transcript | GLYMA09G32740.1 |
intron # | 23 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G32740.1 (Glycine max), 5'ss of exon 23
lower sequence: AT5G65930.3 (Arabidopsis thaliana), 5'ss of exon 20
TGTTGATGAGTGATTCACTTGGTGGTAATGCCAAAACTCTCATGTTTGTGAATGTTTCTCCTGCAGAATCAAATTTGGACGAGACAAATAACTCTCTTATgtatgttctttgtcgttttctttcattataattattttattattgttgagatctcacatcaactagagatctcaacaattaacttgaaaagtgtttctattgttctaacacaattcctctgttatttag
|||||||||| |||||| | || || |||||||| || | |||||||| ||||| ||||| || |||||||||||||||||||| | || |||||| |||| || | || | | | || || | | | ||| || | || ||| | || || | | || | ||| |
TGTTGATGAGCGATTCATTGGGCGGCAATGCCAAGACGTTAATGTTTGTTAATGTGTCTCCAGCCGAATCAAATTTGGACGAGACGTACAATTCTCTTCTgtaagtcatgagttcccatatatatataacataaatcaaatatgcttag-----tgtaaaaatggataatccatattgttttttt------tcctcctttgattccag---------------------
upper sequence: GLYMA09G32740.1 (Glycine max), 5'ss of exon 23
lower sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 22
TGTTGATGAGTGATTCACTTGGTGGTAATGCCAAAACTCTCATGTTTGTGAATGTTTCTCCTGCAGAATCAAATTTGGACGAGACAAATAACTCTCTTATgtatgttctttgtcgttttctttcattataattattttattattgttgagatctcacatcaactagagatctcaacaattaacttgaaaagtgtttctattgttctaacacaattcctctgttatttag
||||||||||||||||||||||||| |||||||||||||| ||||| || || | ||||| || |||||||| ||||| || || | || ||| | | |||||| | | || | ||| | || | || |||| | | || || || |||| | | | |||| ||| || ||| |
TGTTGATGAGTGATTCACTTGGTGGCAATGCCAAAACTCTTATGTTCGTAAACATATCTCCAGCTGAATCAAACTTGGATGAAACTTACAATTCTTTGACgtatgtgttct-tctatctctgttatatttctttgtttaatgtcacaga-attagttatttcctaggtgacact-tagacaactcaaaacac-ttgaagttgct-------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13790109|gb|BG652700.1|BG652700EST: AATGTTTCTCCGGCAGAATCAAATTTGGACGAGACAAATAACTCTCTTAT GTACGCCTCACGAGTGAGATCCATTGTGAATGACCCCAGCAAAAATGTTTC
genomic: AATGTTTCTCCTGCAGAATCAAATTTGGACGAGACAAATAACTCTCTTATgtatgttctt ... tgttatttagGTACGCCTCACGAGTGAGATCCATTGTGAATGACCCCAGCAAAAATGTTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTTGATGAGTGATTCACTTGGTGGTAATGCCAAAACTCTCATGTTTGTGAATGTTTCTCCTGCAGAATCAAATTTGGACGAGACAAATAACTCTCTTATgtatgttctttgtcgttttctttcattataattattttattattgttgagatctcacatcaactagagatctcaacaattaacttgaaaagtgtttctattgttctaacacaattcctctgttatttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG