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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCCAACAATCGTAGCAGGCACTGGTTACCTCCACCATGGGCGATTGTGGCTTTGCTTATTCTTGGATTTAATGAATTTATGACACTTTTAAGgtgcaagccaactttacccatttgatatctttctaaccttttttcctttggaagaacaaggctctatttatattctctcttaactttctacctatcttct...

Basic information

species Glycine max
transcript GLYMA13G42650.1
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G42650.1 (Glycine max), 5'ss of exon 22
lower sequence: AT3G13870.1 (Arabidopsis thaliana), 5'ss of exon 21
GAAGCCAACAATCGTAGCAGGCACTGGTTACCTCCACCATGGGCGATTGTGGCTTTGCTTATTCTTGGATTTAATGAATTTATGACACTTTTAAGgtgcaagccaactttacccatttgatatctttctaaccttttttcctttggaagaacaaggctc--tatttatattctctcttaactttctacctatcttct-----
||||| |||   || |  |   ||||| | || || |||||||| ||  | ||  || || ||||||||||||||||||||||||| || ||||||| |   ||   |  |  | |||||  |   ||      |||||| |    |  | ||||  ||  || | |  ||  |||||   |  || | | |||  |     
GAAGCTAACCGACGGAATAACAACTGGCTGCCACCTCCATGGGCAATCCTTGCCCTGGTTGTTCTTGGATTTAATGAATTTATGACTCTCTTAAGgtaccctccttgtccattcttttgaattgactcggcggctttttcat----acaatcaagattccgtactcactttggctcttcg-tgcctgcatctctcatggcag

upper sequence: GLYMA13G42650.1 (Glycine max), 5'ss of exon 22
lower sequence: Vv09s0002g02200.t01 (Vitis vinifera), 5'ss of exon 21
GAAGCCAACAATCGTAGCAGGCACTGGTTACCTCCACCATGGGCGATTGTGGCTTTGCTTATTCTTGGATTTAATGAATTTATGACACTTTTAAGgtgcaagccaactt-tacccatttgatatctttctaaccttttttcctttggaagaacaaggctctatttat-attctctcttaactttctacctatcttct--------
||||||||||| ||||  |   |||||||||| || |||||||| ||||| ||| || |  | || ||||| |||||||||||||||||| |||||| |  |    | | || |  |   ||   ||| |     |     |||    |  |     || | |||     |   | |||| | |||    || |  |        
GAAGCCAACAAGCGTAATAACAACTGGTTACCACCTCCATGGGCAATTGTTGCTATGGTCGTCCTGGGATTCAATGAATTTATGACACTTCTAAGgtacttgtttgcatgtaactgtggaatcgatttgttggtgtacaagcttc--caagattcccctttgtttgccgctgggttttaattatcttagcatttcttcatggcag