Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTTGAATATTTTGAATCAAAAGCCATAGAGCAGCAAGAAGCAACTAAAAATGGAACTCCAAAGCCTGATGCATCCATTGCAAGTAAAGGTCACCTTAGgtactaacatggtagcccccatttactgtgtttcaaacaggttatatttcagggtacatatatatttaaccactttcatgcag

Basic information

species Glycine max
transcript GLYMA07G03250.1
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G03250.1 (Glycine max), 5'ss of exon 22
lower sequence: AT1G15290.1 (Arabidopsis thaliana), 5'ss of exon 19
GGCTTGAATATTTTGAATCAAAAGCCATAGAGCAGCAAGAAGCAACTAAAAATGGAACTCCAAAGCCTGATGCATCCATTGCAAGTAAAGGTCACCTTAGgtactaacatggtagcccccatttactgtgtttcaaacaggttatatttcagggtacatatatatttaaccactttcatgcag
|||| |||||||||||||||| ||||||||||||||| ||||||     ||||||||  |||||||||||||| ||||| || || ||||| ||||||||||||||| |||| | | || |       |     | |  |    |||||||  |  ||   |  |   |||  | || |||||
GGCTCGAATATTTTGAATCAAGAGCCATAGAGCAGCAGGAAGCAGGCCGAAATGGAATCCCAAAGCCTGATGCTTCCATCGCGAGCAAAGGCCACCTTAGgtactaaaatggaaactcctagaacacataaaggatatggtaattatttcattg-gcaccaaagtccgacc-ttctcttgcag

upper sequence: GLYMA07G03250.1 (Glycine max), 5'ss of exon 22
lower sequence: Vv09s0002g07530.t01 (Vitis vinifera), 5'ss of exon 21
GGCTTGAATATTTTGAATCAAAAGCCATAGAGCAGCAAGAAGCAACTAAAAATGGAACTCCAAAGCCTGATGCATCCATTGCAAGTAAAGGTCACCTTAGgtactaacatggtagcccccatttactgtgtttcaaacaggt-----tatatttcagggtacatatatatttaaccactttcatgcag
|||||||||||||||||||||||||  ||||||||||||||||| | | |||||||||||||||||| |||||||| |||||||| ||||| ||||||||||| | | ||||||  |||   |||||  ||||  |    ||     ||| | |  |    |  | |  ||| |||  |||  |||||
GGCTTGAATATTTTGAATCAAAAGCTTTAGAGCAGCAAGAAGCAGCAAGAAATGGAACTCCAAAGCCAGATGCATCTATTGCAAGCAAAGGCCACCTTAGgtattgatatggtattcccatattacttggtttttatgctgtgtgactatttcttggaactccaaaacctttgaccctttttttgcag