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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGTGTCCATCACACCAAACCACCAAGTGGCATCAATCTTTGCAGCAGCATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCGgtgagtaccattccagtttcgtaattttattgaaacaagcatatcttacataatccttactaaaaactcttctaccaactttggcttttcag

Basic information

species Glycine max
transcript GLYMA08G21540.1
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G21540.1 (Glycine max), 5'ss of exon 21
lower sequence: Vv09s0002g03570.t01 (Vitis vinifera), 5'ss of exon 4
GACTGTGTCCATCACACCAAACCACCAAGTGGCATCAATCTTTGCAGCAGCATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCGgtgagtaccattcc---agtttcgtaa----ttttattgaaacaagcatatcttacataatccttactaaaa-actcttctaccaac-tttggcttttcag
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GACTGTTTCCATCACACCAAACCACCAAGTAGCATCCATATTTGCAGCAGCTTTCTATGCAGTCTTCAATCTTTTCTCAGGCTTCTTCATCCCCAGACCAgtaagttcattttcctcagtggcatagccactttcatgccttccaaccaacctcatccactacaaactaactcaaacctccattaatgtttaaaatttcag

upper sequence: GLYMA08G21540.1 (Glycine max), 5'ss of exon 21
lower sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 20
GACTGTGTCCATCACACCAAACCACCAAGTGGCATCAATCTTTGCAGCAGCATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCGgtgagtaccattcc---agtttcgtaa----ttttattgaaacaagcatatcttacataatccttactaaaa-actcttctaccaac-tttggcttttcag
|||||| ||||||||||||||||||||||| ||||| || ||||||||||| ||||||| | | || ||||| ||||| || ||||| ||||| ||||| || ||| |  || |   |||  | ||     ||| ||     | | |  | || |   | | |  |||||   |  | || |  ||  |||    ||||||
GACTGTTTCCATCACACCAAACCACCAAGTAGCATCCATATTTGCAGCAGCTTTCTATGCAGTATTCAATCTTTTCTCAGGCTTCTTCATCCCCAGACCAgtaagttcattttcctcagtggcatagccactttcatgccttccaaccaacctcatccactacaaactaactcaaacctccattaatgtttaaaatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120493864|gb|EH222031.1|EH222031
EST:     CATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCG                         AAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGTCCAGTGGCATGG
genomic: CATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCGgtgagtacca ... ggcttttcagAAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGTCCAGTGGCATGG
EST: gi|254319129|gb|GR828857.1|GR828857
EST:     CATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCG                         AAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGTCCAGTGGCATGG
genomic: CATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCGgtgagtacca ... ggcttttcagAAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGTCCAGTGGCATGG
EST: gi|16283012|gb|BI945322.1|BI945322
EST:     TTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCG                         AAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGTCCAGTGGCATGG
genomic: TTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCGgtgagtacca ... ggcttttcagAAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGTCCAGTGGCATGG
EST: gi|22525652|gb|BU084463.1|BU084463
EST:     CATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCG                         AAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGTCCAGTGGCATGG
genomic: CATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCGgtgagtacca ... ggcttttcagAAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGTCCAGTGGCATGG
EST: gi|214009273|gb|DB988582.1|DB988582
EST:     CATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCG                         AAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGTCCAGTGGCATGG
genomic: CATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCGgtgagtacca ... ggcttttcagAAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGTCCAGTGGCATGG