Sequence
atgc intronic sequence ATGC exonic sequenceTCTTTCATTGATGGATGCATTTTCTCTGAGTATGCAACATGAGCAAACTACACTAAAGATACTTCAAGCAAAGCTTGGATCAGAAGATCTTCGTACACAGgtcatttccttttctgattgtagtactagaattctggtctaggattgaactaagcattggcaaaatatgggggttgatagatggttttggctaatgttaccatttttcatgaaaggtttttttttccaatgcag
Basic information
species | Glycine max |
transcript | GLYMA07G03250.1 |
intron # | 21 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G03250.1 (Glycine max), 5'ss of exon 21
lower sequence: AT1G15290.1 (Arabidopsis thaliana), 5'ss of exon 18
TCTTTCATTGATGGATGCATTTTCTCTGAGTATGCAACATGAGCAAACTACACTAAAGATACTTCAAGCAAAGCTTGGATCAGAAGATCTTCGTACACAGgtcatttcctt--ttctgattg--tagtactagaattctggtctaggattgaactaagcattggcaaaatatgggggttgatagatggttttggctaatgttaccatttttcatgaaaggtttttttttccaatgcag
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TCTCTCTTTCATGGAAGCACATTCATTGAGTGTGCAACATGAACAAACTACACTTCAGATACTTACTGCAAAACTTGGAGCAGATGACCTTCGTACACAGgtgattgatttgcttctggttcattcgcatacaaatctcagacgaatatt-aatttcttactagcaaagtaacaaagtgaacgttttgaactctgagacatacatgtttgttttctccatttgtctctcacag-----
upper sequence: GLYMA07G03250.1 (Glycine max), 5'ss of exon 21
lower sequence: Vv09s0002g07530.t01 (Vitis vinifera), 5'ss of exon 20
TCTTTCATTGATGGATGCATTTTCTCTGAGTATGCAACATGAGCAAACTACACTAAAGATACTTCAAGCAAAGCTTGGATCAGAAGATCTTCGTACACAGgt-catttccttttctgattgtagtactagaattctggtctaggattgaactaag----cattggcaaaatatgggggttgatagatggttttggctaatgttaccatttttcatgaaaggtttttttttccaatgcag
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ACTGTCTCTGATGGAAGCATATTCTCTCAGTGTGCAACATGAGCAGACTACACTCCAGATACTCCAAGCAAAACTTGGGCCAGAGGATCTCCGTACTCAGgtaccaagattttcctaatcttgacatttagttagttccttgtctctgaaataatattttaattgcaaagaatatagccccttaaat---tatgagtactgta------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208325276|gb|GE125286.1|GE125286EST: CACTAAAGATACTTCAAGCAAAGCTTGGATCAGAAGATCTTCGTACACAG GATGCTGCCGCGTGGCTTGAATATTTTGAATCAAAAGCCATAGAGCAGCAA
genomic: CACTAAAGATACTTCAAGCAAAGCTTGGATCAGAAGATCTTCGTACACAGgtcatttcct ... tccaatgcagGATGCTGCCGCGTGGCTTGAATATTTTGAATCAAAAGCCATAGAGCAGCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTTTCATTGATGGATGCATTTTCTCTGAGTATGCAACATGAGCAAACTACACTAAAGATACTTCAAGCAAAGCTTGGATCAGAAGATCTTCGTACACAGgtcatttccttttctgattgtagtactagaattctggtctaggattgaactaagcattggcaaaatatgggggttgatagatggttttggctaatgttaccatttttcatgaaaggtttttttttccaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG