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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTCTAAAACATTGATTACACCTGTCCAGTGCAAGTCTTTGTGGAGGCAATTCAAGACAGAGACAGAGTACAGTGTCTCTCAGGCCATTTCTGCACAGgcatgatgcataaattatcaagacatttgaatttcttgttggaaaacatattactatttttacttattgatgtaatatattcttctgtattttcag

Basic information

species Glycine max
transcript GLYMA07G01230.1
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01230.1 (Glycine max), 5'ss of exon 20
lower sequence: LOC_Os01g39310.3 (Oryza sativa), 5'ss of exon 20
ATCCTCTAAAACATTGATTACACCTGTCCAGTGCAAGTCTTTGTGGAGGCAATTCAAGACAGAGACAGAGTACAGTGTCTCTCAGGCCATTTCTGCACAGgcatgatgcataaattatcaagacatttgaatttcttgttgga----aaacatattactatt---tttacttattg---atgtaat-atattcttctgtattttcag------------------------
|      ||||| || |||||||||||||||||||| ||||| ||||||||||| ||| | || || || || | |||| | ||||||||  |||| |||| ||  ||      | ||  | |  ||| | |||| | | | |    ||||||  |    |    || || |||||   ||  ||| || |     |||||    |                         
AGAGGAGAAAACTTTAATTACACCTGTCCAGTGCAAATCTTTATGGAGGCAATTTAAGGCTGAAACTGAATATACTGTCACACAGGCCATAGCTGCTCAGgtatcctgt-----taattgaaatctttaattttcgtttggtacttgaaacattgtggagtgggattgacctattgggtataaaatgatgtatgattgtatgcctaactgttttactttttccttcatcag

upper sequence: GLYMA07G01230.1 (Glycine max), 5'ss of exon 20
lower sequence: Vv09s0002g02200.t01 (Vitis vinifera), 5'ss of exon 20
ATCCTCTAAAACATTGATTACACCTGTCCAGTGCAAGTCTTTGTGGAGGCAATTCAAGACAGAGACAGAGTACAGTGTCTCTCAGGCCATTTCTGCACAGgcatgatg-cataaattatcaagacatttgaatttcttgttggaaaacatattactatttttacttattgatgtaatatattcttctgtattttcag-----
  |||| ||||||||||| || ||||| ||||||||   ||||||||||||||||||||  |||||||||||||||||  ||||||||||| |||| ||||||||||  |||| ||| | |  || |||    |||||  |   ||   |     |||||||   |     || |||||      | |  |   | |     
TCCCTCAAAAACATTGATAACCCCTGTTCAGTGCAAAAATTTGTGGAGGCAATTCAAGATGGAGACAGAGTACAGTGTAACTCAGGCCATTGCTGCTCAGgcatgatatcatatatt-taactacttttagcattctttatatcaatt-tccagttatttttttgttcccctgaaatatgagaaccagcttgggctggatat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18692692|gb|BM521540.1|BM521540
EST:     AATTCAAGACAGAGACAGAGTACAGTGTCTCTCAGGCCATTTCTGCACAG                         GAGGCCAACAAGCGCAACAACAACTGGTTACCTCCCCCATGGGCAATAGTT
genomic: AATTCAAGACAGAGACAGAGTACAGTGTCTCTCAGGCCATTTCTGCACAGgcatgatgca ... gtattttcagGAGGCCAACAAGCGCAACAACAACTGGTTACCTCCCCCATGGGCAATAGTT
EST: gi|192301893|gb|FG995511.1|FG995511
EST:     AATTCAAGACAGAGACAGAGTACAGTGTCTCTCAGGCCATTTCTGCACAG                         GAGGCCAACAAGCGCAACAACAACTGGTTACCTCCCCCATGGGCAATAGTT
genomic: AATTCAAGACAGAGACAGAGTACAGTGTCTCTCAGGCCATTTCTGCACAGgcatgatgca ... gtattttcagGAGGCCAACAAGCGCAACAACAACTGGTTACCTCCCCCATGGGCAATAGTT