1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTGGAGGCTGAAGAATTCATTGTTATGGGAAAGTGGTTGGAGCTAGCATCATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAGgtagagtcatctgttttacctctgctcttggtgttgcattcctcttgccttgatgaaaaacatgaattctatgtggcgtgtatgttttgtgcaatcatct...
species | Glycine max |
transcript | GLYMA20G22090.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAG ATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAAEST: gi|15000159|gb|BI320973.1|BI320973
genomic: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAGgtagagtcat ... ctcgtaccagATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAA
EST: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAG ATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAAEST: gi|208278659|gb|GE080370.1|GE080370
genomic: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAGgtagagtcat ... ctcgtaccagATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAA
EST: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAG ATATAGAGTCCATCTTCEST: gi|15000274|gb|BI321088.1|BI321088
genomic: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAGgtagagtcat ... ctcgtaccagATATAGAGTCCATCTTC
EST: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAG ATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAAEST: gi|193531663|gb|FK491413.1|FK491413
genomic: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAGgtagagtcat ... ctcgtaccagATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAA
EST: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAG ATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACTAAAGACCGAAEST: gi|19271164|gb|BM887420.1|BM887420
genomic: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAGgtagagtcat ... ctcgtaccagATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTAC-AAAGACCGAA
EST: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAG ATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAAEST: gi|193464573|gb|FK431913.1|FK431913
genomic: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAGgtagagtcat ... ctcgtaccagATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAA
EST: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAG ATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAAEST: gi|298176542|gb|HO023129.1|HO023129
genomic: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAGgtagagtcat ... ctcgtaccagATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAA
EST: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAG ATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAAEST: gi|9819641|gb|BE555154.1|BE555154
genomic: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAGgtagagtcat ... ctcgtaccagATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAA
EST: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAG ATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAAEST: gi|8283494|gb|BE021053.1|BE021053
genomic: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAGgtagagtcat ... ctcgtaccagATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAA
EST: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAG ATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAAEST: gi|19452639|gb|BM954049.1|BM954049
genomic: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAGgtagagtcat ... ctcgtaccagATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAA
EST: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAG ATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAAEST: gi|209729516|gb|BW651856.1|BW651856
genomic: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAGgtagagtcat ... ctcgtaccagATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAA
EST: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAG ATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAAEST: gi|7684961|gb|AW755609.1|AW755609
genomic: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAGgtagagtcat ... ctcgtaccagATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAA
EST: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAG ATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAAEST: gi|192326394|gb|FK015911.1|FK015911
genomic: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAGgtagagtcat ... ctcgtaccagATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAA
EST: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAG ATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAAEST: gi|298176621|gb|HO023208.1|HO023208
genomic: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAGgtagagtcat ... ctcgtaccagATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAA
EST: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAG ATATAGAGTCCATCTTCACTATCACCTGCAATCTTGTTACAAAGACCGAAAEST: gi|208087969|gb|GD891097.1|GD891097
genomic: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAGgtagagtcat ... ctcgtaccagATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAA
EST: TTTTCTCGAAGGTTTCTGAAAAAG ATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAAEST: gi|208313706|gb|GE113000.1|GE113000
genomic: TTTTCTCGAAGGTTTCTGAAAAAGgtagagtcat ... ctcgtaccagATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAA
EST: TTGATGATTACCTCTGCTGAATTGATTTTCNCGAAGGTTTCTGAAAAAAG ATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAEST: gi|298175563|gb|HO018274.1|HO018274
genomic: TTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTG-AAAAAGgtagagtcat ... ctcgtaccagATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAA
EST: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAG ATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAAEST: gi|15202225|gb|BI425289.1|BI425289
genomic: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAGgtagagtcat ... ctcgtaccagATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAA
EST: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAG ATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAA
genomic: ATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAGgtagagtcat ... ctcgtaccagATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTTACAAAGACCGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGAGGCTGAAGAATTCATTGTTATGGGAAAGTGGTTGGAGCTAGCATCATTGATGATTACCTCTGCTGAATTGATTTTCTCGAAGGTTTCTGAAAAAGgtagagtcatctgttttacctctgctcttggtgttgcattcctcttgccttgatgaaaaacatgaattctatgtggcgtgtatgttttgtgcaatcatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaca