Sequence
atgc intronic sequence ATGC exonic sequenceCTTACCTGTGAAAGAGGTGCTTGAGCATTCTGGCCTGTCATTGGAACAAATATATGCAGTGGAGTTGATTGGAGGTGCCACCAGAGTGCCAAAATTACAGgtttgattaatattctttttccttcgtcaacagtggtatttgatctgcagatagctgcatgatattgaactccatgcttgatagtcaacaacatttgttt...
Basic information
species | Glycine max |
transcript | GLYMA20G16070.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G16070.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0008g04410.t01 (Vitis vinifera), 5'ss of exon 3
CTTACCTGTGAAAGAGGTGCTTGAGCATTCTGGCCTGTCATTGGAACAAATATATGCAGTGGAGTTGATTGGAGGTGCCACCAGAGTGCCAAAATTACAGgtttgattaatattctttttccttcgtcaacagtggtatttgatctgcagatagctgcatgatattgaactccatgcttgatagtcaacaacatttgttt----
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TATTCCTGCGAAGGAAGTGCTTAAGAATTCAGGTTTGAAGGTTGATGAGATATATGCAGTGGAGCTGATAGGAGGTGCCACTCGAGTGCCAAAGTTGCAGgtttgcatcacctttctccagttttatatattgccctttctg-tgcataga-agcagcactgactttagtttaat--taactctcccaatgcactagatagttg
upper sequence: GLYMA20G16070.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0043g00710.t01 (Vitis vinifera), 5'ss of exon 4
CTTACCTGTGAAAGAGGTGCTTGAGCATTCTGGCCTGTCATTGGAACAAATATATGCAGTGGAGTTGATTGGAGGTGCCACCAGAGTGCCAAAATTACAGgtttgattaatattctttttccttcgtca-acagtggtatttgatctgcagatagctgcatgatattgaactccatgcttgatagtcaacaacatttgttt------
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TATTCTTGTGAAGGAAGTGCTTAAGAATTCAGGTTTGAAGGTTGATGAGATATATGCAGTGGAGCTGATAGGAGGTGCCACTCGAGTGCCAAAGTTGCAGgtttgc---atttccttcctccagttttacatattgccattt--tctgtgcatagaagca--gcactgactttagtttaaattaactatcccaatgtactaaatagt
upper sequence: GLYMA20G16070.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv09s0096g00090.t01 (Vitis vinifera), 5'ss of exon 5
CTTACCTGTGAAAGAGGTGCTTGAGCATTCTGGCCTGTCATTGGAACAAATATATGCAGTGGAGTTGATTGGAGGTGCCACCAGAGTGCCAAAATTACAGgtttgattaatattctttttccttcgtcaacagtggtatttgatctgcagatagctgcatgatattgaactccatgcttgatagtcaacaacatttgttt--
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TATTCCTGTGAAGGAAGTGCTTAAGAATTCAGGTTTGAAGGTTGATGAGATATATGCAGTGGAGCTGATAGGAGGTGCCACTCGAGTGCCAAAGTTGCAGgtttgcatttccttcctccagttttacatattgccattttctgtgcttaga-agcagcactg-actttagtttaaattaactatcccaatgtactaaatagtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9440402|gb|BE440908.1|BE440908EST: GGAGGTGCCACCAGATTGCCAAAATTACAG GCTAAGCTTCAAGAATTCCTTGGGAGAAAAGAACTTGATAGGCATCTTGAT
genomic: GGAGGTGCCACCAGAGTGCCAAAATTACAGgtttgattaa ... attattacagGCTAAGCTTCAAGAATTCCTTGGGAGAAAAGAACTTGATAGGCATCTTGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTACCTGTGAAAGAGGTGCTTGAGCATTCTGGCCTGTCATTGGAACAAATATATGCAGTGGAGTTGATTGGAGGTGCCACCAGAGTGCCAAAATTACAGgtttgattaatattctttttccttcgtcaacagtggtatttgatctgcagatagctgcatgatattgaactccatgcttgatagtcaacaacatttgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG