Sequence
atgc intronic sequence ATGC exonic sequenceCAATTACTGCCCTACGTGGGCTCTTTCCTGGCCATATCGTAGGCAAAATTTGTTACGAGAAATAGTTGGTTACCGTGCTGATATTATTTGTCTTCAGGAGgtatgtaaatgttgttttggctgtgattttgttggtcattaaacttattttaataacagtactgatcttcaactcatttattttcaagattttttttaga...
Basic information
species | Glycine max |
transcript | GLYMA19G39210.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G39210.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g07080.3 (Oryza sativa), 5'ss of exon 3
CAATTACTGCCCTACGTGGGCTCTTTCCTGGCCATATCGTAGGCAAAATTTGTTACGAGAAATAGTTGGTTACCGTGCTGATATTATTTGTCTTCAGGAGgtatgtaaatgttgttttggctgtgattttgttggtcattaaacttattttaataac---agtactg-atcttcaactcatttattttcaagattttttttaga---
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CAGCTATTGCCCAACTTGGGCACTTTCATGGCCTTACAGAAGACAAAATTTGCTGCGTGAAATAATTGGTTACCATGCGGATATCATCTGCCTTCAGGAGgtatgcca------ttttaattgttatccttttt-ttatagaaaatatttgaaagatctgaatgttgcatatctaccacttccgacttacatatgtaaagtgcgcga
upper sequence: GLYMA19G39210.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G124051_T01 (Zea mays), 5'ss of exon 3
CAATTACTGCCCTACGTGGGCTCTTTCCTGGCCATATCGTAGGCAAAATTTGTTACGAGAAATAGTTGGTTACCGTGCTGATATTATTTGTCTTCAGGAGgtatgtaaa-tgttgttttggctgtgattttgttggtcattaaacttattttaataacagtactgatcttcaactcatttattttcaagattttttttaga
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CAGCTATTGTCCAACTTGGGCACTTACATGGGCTTATAGAAGGCAAAATTTGTTGCGTGAAATTATTGGTTACCATGCTGATATTATCTGCCTTCAGGAGgtatgaatgctattgtttttcatgtttgaagtttaaggctctgatttgcatctttaattgttaataaattgcacttatt-atgttcagcatgatgagttta
upper sequence: GLYMA19G39210.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G043509_T02 (Zea mays), 5'ss of exon 3
CAATTACTGCCCTACGTGGGCTCTTTCCTGGCCATATCGTAGGCAAAATTTGTTACGAGAAATAGTTGGTTACCGTGCTGATATTATTTGTCTTCAGGAGgtatgtaaatgttgttttggctgtgattttgttggtcattaaacttatttt-aataacagtactgatcttcaactcatttattttcaagattttttttaga-------
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TAGCTACTGCCCAACATGGGCACTTACCTGGACTTATAGAAGACAAAATTTGTTGCGTGAAATTATTGGTTATCATGCTGATATCATCTGTCTTCAGGAGgtatcactttcgattttcgaatctaacct--------attcaatttatttttgctggcatcctttttctctattttcttgatggataagttttactgtgtaaattaag
upper sequence: GLYMA19G39210.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0007g07020.t01 (Vitis vinifera), 5'ss of exon 2
CAATTACTGCCCTACGTGGGCTCTTTCCTGGCCATATCGTAGGCAAAATTTGTTACGAGAAATAGTTGGTTACCGTGCTGATATTATTTGTCTTCAGGAGgtatgtaaatgt-tgttttggctgtgattttgttggtcattaaacttattttaataaca--gtactgatcttcaactcatttattttcaagattttttttaga-----
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CAGTTACTGCCCCTCATGGGCTCTTTCTTGGCCTTACCGCAAGCAGAATTTATTACGGGAAATAGTTGGATATCGTGCTGACATTGTCTGTCTGCAAGAGgtatctgaggttacactttaattgttattcaatttctc-------ttgtgttgctagcaatgtattgagacttt-caggttaagcttctgaccttttttgacatgtgtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6501991|gb|AW203364.1|AW203364EST: TGTTACGAGAAATAGTTGGTTACCGTGCTGATATTATTTGTCTTCAGGAG GTTCAAAGTGATCATTATGAAGANNNNNNNNCTCCTGAACTAGACAAACAT
genomic: TGTTACGAGAAATAGTTGGTTACCGTGCTGATATTATTTGTCTTCAGGAGgtatgtaaat ... ttttccccagGTTCAAAGTGATCATTATGAAGATTTTTTTTCTCCTGAACTAGACAAACAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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CAATTACTGCCCTACGTGGGCTCTTTCCTGGCCATATCGTAGGCAAAATTTGTTACGAGAAATAGTTGGTTACCGTGCTGATATTATTTGTCTTCAGGAGgtatgtaaatgttgttttggctgtgattttgttggtcattaaacttattttaataacagtactgatcttcaactcatttattttcaagattttttttaga
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