Sequence
atgc intronic sequence ATGC exonic sequenceGAACTGGAGACCATACATTTGAGAGAAGACTGCGTCTTGGTGGACCCCTGATGAAGGAAAACATTGCAACCATGGTACTTGAGAGgtcagggtcaatttctcatgatcttattctgaaaccaaaagcactgaccttttttttaaaactattcattaatatatgctctgtatttgtggttatgcaa...
Basic information
species | Glycine max |
transcript | GLYMA19G32670.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G32670.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g10160.1 (Oryza sativa), 5'ss of exon 3
GAACTGGAGACCATACATTTGAGAGAAGACTGCGTCTTGGTGGACCCCTGATGAAGGAAAACATTGCAACCATGGTACTTGAGAGgtcagggtc------aatttctca-tgatcttattctgaaaccaaaagcactgaccttttttttaaaactattcattaatatatgctctgtatttgtggttatgcaa
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GCACTGGTGATCACTCGTTTGAGAGAAGACTTCGACTTGGTGGACCTCTTTTGAAGGACAACATTGCAACTATGGTTCTTGAGAGgtgaggcttgtatagaatgccagaatggttgtcttacgccacctttgataccaaagcttttttc----ctaacccgcaagatctgatttct-caaatgaat-tccag
upper sequence: GLYMA19G32670.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0007g07700.t01 (Vitis vinifera), 5'ss of exon 2
GAACTGGAGACCATACATTTGAGAGAAGACTGCGTCTTGGTGGACCCCTGATGAAGGAAAACATTGCAACCATGGTACTTGAGAGgtcagggtcaatttctcatgatcttattctgaaaccaaaagcactgaccttttttttaaaactattcattaatatatgctctgtatttgtggttatgcaa----------------
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GCACTGGGGACCATACATTTGAGCGAAGATTGCGTCTTGGTGGTCCATTGTTGAAGGAAAACATAGCAACCATGGTGCTTGAAAGgtgagaaccaattcaacagagttcattttttaaactggaagaaaagcttctcctaattgattaatgtgaaacaataattagtacttctaaatttagataaaaatatgtgactgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9258805|gb|BE346952.1|BE346952EST: CTTGGTGGACCCCTGATGAAGGAAAACATTGCAACCATGGTACTTGAGAG GAGGAGTACATGCTGCAATGGTTGGGTCACTTCACCCTACACCTGTTGCAA
genomic: CTTGGTGGACCCCTGATGAAGGAAAACATTGCAACCATGGTACTTGAGAGgtcagggtca ... tttactccagGAGGAGTACATGCTGCAATGGTTGGGTCACTTCACCCTACACCTGTTGCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAACTGGAGACCATACATTTGAGAGAAGACTGCGTCTTGGTGGACCCCTGATGAAGGAAAACATTGCAACCATGGTACTTGAGAGgtcagggtcaatttctcatgatcttattctgaaaccaaaagcactgaccttttttttaaaactattcattaatatatgctctgtatttgtggttatgcaa
- - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA