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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGTAAAAAGAGTCAAAGATGGAGCTTCTCAGGACCAAATTTTGAATGAAACAAGATTGCAAAACTTGCAACGTGAACTTGTGAAGGACTTACGCGAGgtactcaaacttttatatcttaaattcaataaaatttcttattctgacaattgcatgtatgtgaaccatatcttccaaattgtgatttttattattattg...

Basic information

species Glycine max
transcript GLYMA19G24980.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G24980.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G01780.1 (Arabidopsis thaliana), 5'ss of exon 2
TGGTGTAAAAAGAGTCAAAGATGGAGCTTCTCAGGACCAAATTTTGAATGAAACAAGATTGCAAAACTTGCAACGTGAACTTGTGAAGGACTTACGCGAGgtactcaaacttttatatcttaaattcaataaaatttcttattctgacaattgcatgtatgtgaaccatatcttccaaattgtgatttt-tattattattg----------------------------------------------------------------------
 || || || ||  | |||||||| ||||| ||||| ||||| || ||||| ||| ||||||| |||||||||||||| ||||| |||||  | |  |||||| | || | |    | || ||| | |  |  |   |||           |  | | || | |   |    |||  || |   ||||  || ||    ||                                                                      
AGGAGTGAAGAGGCTGAAAGATGGTGCTTCCCAGGATCAAATATTAAATGAGACACGATTGCAGAACTTGCAACGTGAGCTTGTTAAGGATCTCCAAGAGgtaattaagcct---cagctgaaagttagaagtaacccttggcaattttcctcgaagaattttagttaggctttcttaagtactatttaatactaaatgtggaggagaactattgcttgtggactgaaacgtggtcaatgtcttataaaaatcttgatctcaatttggcag

upper sequence: GLYMA19G24980.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0171g00280.t01 (Vitis vinifera), 5'ss of exon 2
TGGTGTAAAAAGAGTCAAAGATGGAGCTTCTCAGGACCAAATTTTGAATGAAACAAGATTGCAAAACTTGCAACGTGAACTTGTGAAGGACTTACGCGAGgtactcaaacttttatatcttaaattcaataaaatttcttattctgacaattgcatgtatgtgaaccatatcttc---caaattg-tgatttttattattattg
 || || ||||| || |||||||| ||||||||||| |||||  ||||||| ||||| |||||||| |||||||||||||||||||| ||  | || |||||    ||  | |  | |   | ||| || |  ||   |     | ||    ||||||     |  ||| | |      |||||| | || |||| || |    
AGGGGTGAAAAGGGTGAAAGATGGTGCTTCTCAGGATCAAATACTGAATGAGACAAGGTTGCAAAATTTGCAACGTGAACTTGTGAAAGATCTTCGTGAGgtttgtaagttctcct-tgaaagattaaacagtatacttctcaataact-cagcatgttgacaatgcatttatgtgattaaattgataatctttagtaatcc--