1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTCTTGCTTTGTCTGTAACATACGATGAACCATGGTTTACAAATACTATAAACTTTTGGGTGGGACCAGGGACCCAGGTCTGGCCAGATCAAAAGATCAAgtaagtatttctccacatgcctcacttatgaatcatttgttctttccatatgattttaatttataaccttttaacatacatttcag
species | Glycine max |
transcript | GLYMA16G12080.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AACTTTTGGGTGGGACCAGGGACCCAGGTCTGGCCAGATCAAAAGATCAA GTTGAAATTAAAGGCAGTCTATATGTACGCTGCTGGATTTTACTCATACTCEST: gi|151411962|gb|EV281773.1|EV281773
genomic: AACTTTTGGGTGGGACCAGGGACCCAGGTCTGGCCAGATCAAAAGATCAAgtaagtattt ... tacatttcagGTTGAAATTAAAGGCAGTCTATATGTACGCTGCTGGATTTTACTCATACTC
EST: AACTTTTGGGTGGGGCCAAGGACCCAGGTCTGGCCAGATCAAAAGATCAA GTTGAAATTAAAGGCAGTCTATATGTACGCTGCTGGATTTTACTCATACTCEST: gi|7685255|gb|AW755903.1|AW755903
genomic: AACTTTTGGGTGGGACCAGGGACCCAGGTCTGGCCAGATCAAAAGATCAAgtaagtattt ... tacatttcagGTTGAAATTAAAGGCAGTCTATATGTACGCTGCTGGATTTTACTCATACTC
EST: AACTTTTGGGTGGGACCAGGGACCCAGGTCTGGCCAGATCAAAAGATCAA GGTGAAATTAAAGGCAGTCTATATGTACGCTGCTGGATTGTACTGATACTCEST: gi|23063878|gb|BU578660.1|BU578660
genomic: AACTTTTGGGTGGGACCAGGGACCCAGGTCTGGCCAGATCAAAAGATCAAgtaagtattt ... tacatttcagGTTGAAATTAAAGGCAGTCTATATGTACGCTGCTGGATTTTACTCATACTC
EST: AACTTTTGGGTGGGACCAGGGACCCAGGTCTGGCCAGATCAAAAGATCAA GTTGAAATTAAAGGCAGTCTATATGTACGCTGCTGGATTTTACTCATACTCEST: gi|208211310|gb|GE012203.1|GE012203
genomic: AACTTTTGGGTGGGACCAGGGACCCAGGTCTGGCCAGATCAAAAGATCAAgtaagtattt ... tacatttcagGTTGAAATTAAAGGCAGTCTATATGTACGCTGCTGGATTTTACTCATACTC
EST: AACTTTTGGGTGGGACCAGGGACCCAGGTCTGGCCAGATCAAAAGATCAA GTTGAAATTAAAGGCAGTCTATATGTACGCTGCTGGATTTTACTCATACTCEST: gi|151408094|gb|EV277902.1|EV277902
genomic: AACTTTTGGGTGGGACCAGGGACCCAGGTCTGGCCAGATCAAAAGATCAAgtaagtattt ... tacatttcagGTTGAAATTAAAGGCAGTCTATATGTACGCTGCTGGATTTTACTCATACTC
EST: AACTTTTGGGTGGGACCAGGGACCCAGGTCTGGCCAGATCAAAAGATCAA GTTGAAATTAAAGGCAGTCTATATGTACGCTGCTGGATTTTACTCATACTCEST: gi|298185707|gb|HO030920.1|HO030920
genomic: AACTTTTGGGTGGGACCAGGGACCCAGGTCTGGCCAGATCAAAAGATCAAgtaagtattt ... tacatttcagGTTGAAATTAAAGGCAGTCTATATGTACGCTGCTGGATTTTACTCATACTC
EST: AACTTTTGGGTGGGACCAGGGACCCAGGTCTGGCCAGATCGAAAGATCAA GTTGAAATTAAAGGCAGTCTATATGTACGCTGCTGGATTTTACTCATACTC
genomic: AACTTTTGGGTGGGACCAGGGACCCAGGTCTGGCCAGATCAAAAGATCAAgtaagtattt ... tacatttcagGTTGAAATTAAAGGCAGTCTATATGTACGCTGCTGGATTTTACTCATACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTTGCTTTGTCTGTAACATACGATGAACCATGGTTTACAAATACTATAAACTTTTGGGTGGGACCAGGGACCCAGGTCTGGCCAGATCAAAAGATCAAgtaagtatttctccacatgcctcacttatgaatcatttgttctttccatatgattttaatttataaccttttaacatacatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA