Sequence
atgc intronic sequence ATGC exonic sequenceAGTTGCCATTAAGAAGATTGGCAATGCATTCGACAACAGAATAGATGCCAAAAGGACCTTACGGGAAATTAAACTTCTTCGGCACATGGATCATGCAAATgtaagtttgatactattttacttgcactcggacattatacaccttgttttccttgatgtcattgttcattttcatctgtggcagtctgaaatgttcctat...
Basic information
species | Glycine max |
transcript | GLYMA16G03670.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G03670.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os10g38950.1 (Oryza sativa), 5'ss of exon 2
AGTTGCCATTAAGAAGATTGGCAATGCATTCGACAACAGAATAGATGCCAAAAGGACCTTACGGGAAATTAAACTTCTTCGGCACATGGATCATGCAAATgtaagtttgatactattttacttgcactcggacattatacaccttgttttccttgatgtcattgttcattttca-tctgtggcagtctgaaatgttcctat-----
||||||||| ||||||||||||||||||||||||||| || |||||||| |||| | | ||||| || || ||||| |||||||| || | |||||||| | | ||| | ||| | |||||| ||| || | ||||| | | | || || | | || | | | || |
AGTTGCCATCAAGAAGATTGGCAATGCATTCGACAACCATATCGATGCCAAGCGGACACTGAGAGAAATCAAGCTGCTTCGCCACATGGACCACGAGAATgtaagagctgt-ttgtttaaattggttttcgacatt-----cctagtgattattgatcgaacttggccttaccactattaggtaatttattgggtgtgatttacat
upper sequence: GLYMA16G03670.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv15s0046g02010.t01 (Vitis vinifera), 5'ss of exon 2
AGTTGCCATTAAGAAGATTGGCAATGCATTCGACAACAGAATAGATGCCAAAAGGACCTTACGGGAAATTAAACTTCTTCGGCACATGGATCATGCAAATgtaagttt-gatactattttacttgcactcggacattatacaccttgttttccttgatgtcattgttcattttcatctgtggcagtctgaaatgttcctat
||||||||||||||||||||| |||||||| || || || |||||||||||| |||| |||||||||||||| |||||||| ||||||||||||| |||||||||||| | | | ||| | | ||| | ||||| || | | ||| | | | ||| ||| | | || | |
AGTTGCCATTAAGAAGATTGGTAATGCATTTGATAATAGGATAGATGCCAAACGGACATTACGGGAAATTAAGCTTCTTCGCCACATGGATCATGAAAATgtaagttttggttcctccatacctcgggccaattattgcttctatagttttactgtctttgtttggcaagatgattgtgttttgctctaata-attgttttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|23052819|gb|BU577310.1|BU577310EST: AAAGGACCTTACGGGAAATTAAACTTCTTCGGCACATGGATCATGCAAAT ATTATGTCCATTAAAGATATTATACGTCCTCCACAGAAGGAAAACTTCAAT
genomic: AAAGGACCTTACGGGAAATTAAACTTCTTCGGCACATGGATCATGCAAATgtaagtttga ... tccaatgcagATTATGTCCATTAAAGATATTATACGTCCTCCACAGAAGGAAAACTTCAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTTGCCATTAAGAAGATTGGCAATGCATTCGACAACAGAATAGATGCCAAAAGGACCTTACGGGAAATTAAACTTCTTCGGCACATGGATCATGCAAATgtaagtttgatactattttacttgcactcggacattatacaccttgttttccttgatgtcattgttcattttcatctgtggcagtctgaaatgttcctat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA