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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGGTTTTCTACAAAGGAAGAGCGCCACATGGCCAGAAATCCGATTGGATCATGCATGAATACAGACTAGACGACAACAACACCAGCGACATCAATATTgtaagcaacacactagctagttggttacaatttcatgcgaatttaatttagcagttatcacaaccaaagttttaaaaaacgatcagcaatggtaatttgg...

Basic information

species Glycine max
transcript GLYMA16G02200.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G02200.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv15s0048g02660.t01 (Vitis vinifera), 5'ss of exon 2
------TCTGGTTTTCTACAAAGGAAGAGCGCCACATGGCCAGAAATCCGATTGGATCATGCATGAATACAGACTAGACGACAACAACACCAGCGACATCAATATTgtaagcaacacactagctag-ttggttacaatttcatgcgaatttaatttagcagttatcacaaccaaagttttaaaaaacgatcagcaatggtaatttgg--
      |||||| ||||| |||||  |||| ||||||||||| ||||| || |||||||||||||| |||||||| || || ||   |||||  || | | |  |   |  ||    | |    || || |||     || |    ||||| | || | ||| |      |       ||| |||  |      ||||||||  ||   
GAAGACTCTGGTGTTCTATAAAGGCCGAGCCCCACATGGCCAAAAATCTGACTGGATCATGCATGAGTACAGACTTGATGATAA---CACCAATGATACCCAGgtc--agccatttgatttttcagcttagttttggcttga----aatttcagtttggagt-agtgttccattgaccttacaaactgggttataatggtaacctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22930838|gb|BU547985.1|BU547985
EST:     TCATGCATGAATACAGACTAGACGACAACAACACCAGCGACACCAATATT                         GTGTCCAATGTGATGGGGGATGCTGCTCAGGAAGAAGGGTGGGTGGTGTGC
genomic: TCATGCATGAATACAGACTAGACGACAACAACACCAGCGACATCAATATTgtaagcaaca ... aaaaaaatagGTGTCCAATGTGATGGGGGATGCTGCTCAGGAAGAAGGGTGGGTGGTGTGC