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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATCTATTACCGGAAAGCAAAAGAAGAAGGTTGGCGAGCTCGAAGTGCGTTTAAACTCCTTCAGATAGACGAGGAATTCAACCTTTTTGATGgtgggtgcctgccttgcccatgaaagcctgtctttaactgtttgggtttgctgtaattttattgcagatcctctgtcctgaatatttatatagaaaaagtgccagcaaataacccctgctctcagctttgagattaatttctttttttttcag

Basic information

species Glycine max
transcript GLYMA15G07970.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G07970.4 (Glycine max), 5'ss of exon 3
lower sequence: AT5G01230.1 (Arabidopsis thaliana), 5'ss of exon 3
GATATCTATTACCGGAAAGCAAAAGAAGAAGGTTGGCGAGCTCGAAGTGCGTTTAAACTCCTTCAGATAGACGAGGAATTCAACCTTTTTGATGgtgggtgcctgccttgcccatgaaagcctgtctttaactgtttgggtttg--ctgtaattttattgcagatcctctgtcctgaa---tatttatatagaaaaagtgccagcaaataacccctgctctcagctttgaga-ttaatttctttttttttcag
||||||||||| || ||||| ||||||||||| ||||| ||  ||||||| ||||| || |||||||| || || ||||| ||  ||||||| |||||   | ||  |     ||   | |     | | |    |          ||  |   | ||  | |  | |  ||||  ||   |  ||| || |||  | ||| |  |  |        |    | ||    || ||  | |   || | | |||
GATATCTATTATCGTAAAGCTAAAGAAGAAGGATGGCGTGCAAGAAGTGCTTTTAAGCTTCTTCAGATTGATGAAGAATTTAATATTTTTGAAGgtggtctcttgaatccttaatcttatctctcatatgaaccctcattcacagactcaagcctaatcacgggacatgagtccaaaaacctgctta-attgaatgaatgc-aatacttttgatagacgtataactcaccgactttgtcttaattatatgcag

upper sequence: GLYMA15G07970.4 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g01960.t01 (Vitis vinifera), 5'ss of exon 2
GATATCTATTACCGGAAAGCAAAAGAAGAAGGTTGGCGAGCTCGAAGTGCGTTTAAACTCCTTCAGATAGACGAGGAATTCAACCTTTTTGATGgtgggtgcctgccttgcccatgaaagcctgtctttaactgtttgggtttgctgtaattttattgcagatcctctgtcctgaatatttatatagaaaaagtgccagcaaataacccctgctctcagctttgagattaatttctttttttttcag
|||||||| || || |||||||| |||||||||||||| ||||||||||| || |||||||||||||| || |||||||||||| | ||||| |||     |     | | || |    |  ||| ||||  |       ||   |    |  ||  |  |||  | | |  |   |    || |   | |||                                                      
GATATCTACTATCGTAAAGCAAAGGAAGAAGGTTGGCGTGCTCGAAGTGCCTTCAAACTCCTTCAGATTGATGAGGAATTCAACATATTTGAAGgtacaacctattttggtcctttgttgtgtgtgtttattttacctttttaatttggttcctaaagtcgatttttt-ttttttttgccaatgttttagaagct----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7926380|gb|AW832406.1|AW832406
EST:     AAGTGCGTTTAAACTCCTTCAGATAGACGAGGAATTCAACCTTTTTGATG                         GAGTGAAGCGTGTTGTAGATTTATGTGCTGCCCCAGGTAGCTGGAGTCAG
genomic: AAGTGCGTTTAAACTCCTTCAGATAGACGAGGAATTCAACCTTTTTGATGgtgggtgcct ... tttttttcagGAGTGAAGCGTGTTGTAGATTTATGTGCTGCCCCAGGTAGCTGGAGTCAG
EST: gi|151411265|gb|EV281076.1|EV281076
EST:     AAGTGCGTTTAAACTCCTTCAGATAGACGAGGAATTCAACCTTTTTGATG                         GAGTGAAGCGTGTTGTAGATTTATGTGCTGCCCCAGGTAGCTGGAGTCAG
genomic: AAGTGCGTTTAAACTCCTTCAGATAGACGAGGAATTCAACCTTTTTGATGgtgggtgcct ... tttttttcagGAGTGAAGCGTGTTGTAGATTTATGTGCTGCCCCAGGTAGCTGGAGTCAG