1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAATAGCAGGTTCTTTCTGGGTTCTAACAAAGTAATGCAAGTTGCTTTAGGTCGCTCCGCTTCAGATGAGATCAGACCTGGCCTTCACAAGGTTTCAAAGgttgcatatcaatccctccctcccttttaccaactaccccattcaacattttctattttattttcttattatattctccttttttttttgtag
species | Glycine max |
transcript | GLYMA15G05360.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTCGCTCCGCTTCAGATGAGATCAGACCTGGCCTTCACAAGGTTTCAAAG CTATTGCGTGGAGATTCTGGGATGTTTTTCACCAATTTGTCTAAGGAAGAAEST: gi|31460855|gb|CD402883.1|CD402883
genomic: GTCGCTCCGCTTCAGATGAGATCAGACCTGGCCTTCACAAGGTTTCAAAGgttgcatatc ... ttttttgtagCTATTGCGTGGAGATTCTGGGATGTTTTTCACCAATTTGTCTAAGGAAGAA
EST: GTCGCTCCGCTTCAGATGAGATCAGACCTGGCCTTCACAAGGTTTCAAAG CTATTGCGTGGAGATTCTGGGATGTTTTTCACCAATTTGTCTAAGGAAGAAEST: gi|151409671|gb|EV279479.1|EV279479
genomic: GTCGCTCCGCTTCAGATGAGATCAGACCTGGCCTTCACAAGGTTTCAAAGgttgcatatc ... ttttttgtagCTATTGCGTGGAGATTCTGGGATGTTTTTCACCAATTTGTCTAAGGAAGAA
EST: GTCGCTCCGCTTCAGATGAGATCAGACCTGGCCTTCACAAGGTTTCAAAG CTATTGCGTGGAGATTCTGGGATGTTTTTCACCAATTTGTCTAAGGAAGAAEST: gi|298188090|gb|HO032047.1|HO032047
genomic: GTCGCTCCGCTTCAGATGAGATCAGACCTGGCCTTCACAAGGTTTCAAAGgttgcatatc ... ttttttgtagCTATTGCGTGGAGATTCTGGGATGTTTTTCACCAATTTGTCTAAGGAAGAA
EST: GTCGCTCCGCTTCAGATGAGATCAGACCTGGCCTTCACAAGGTTTCAAAG CTATTGCGTGGAGATTCTGGGATGTTTTTCACCAATTTGTCTAAGGAAGAAEST: gi|298178045|gb|HO027428.1|HO027428
genomic: GTCGCTCCGCTTCAGATGAGATCAGACCTGGCCTTCACAAGGTTTCAAAGgttgcatatc ... ttttttgtagCTATTGCGTGGAGATTCTGGGATGTTTTTCACCAATTTGTCTAAGGAAGAA
EST: GTCGCTCCGCTTCAGATGAGATCAGACCTGGCCTTCACAAGGTTTCAAAG CTATTGCGTGGAGATTCTGGGATGTTTTTCACCAATTTGTCTAAGGAAGAAEST: gi|298192153|gb|HO036235.1|HO036235
genomic: GTCGCTCCGCTTCAGATGAGATCAGACCTGGCCTTCACAAGGTTTCAAAGgttgcatatc ... ttttttgtagCTATTGCGTGGAGATTCTGGGATGTTTTTCACCAATTTGTCTAAGGAAGAA
EST: GTCGCTCCGCTTCAGATGAGATCAGACCTGGCCTTCACAAGGTTTCAAAG CTATTGCGTGGAGATTCTGGGATGTTTTTCACCAATTTGTCTAAGGAAGAAEST: gi|33390011|gb|CA853218.1|CA853218
genomic: GTCGCTCCGCTTCAGATGAGATCAGACCTGGCCTTCACAAGGTTTCAAAGgttgcatatc ... ttttttgtagCTATTGCGTGGAGATTCTGGGATGTTTTTCACCAATTTGTCTAAGGAAGAA
EST: GTCGCTCCGCTTCAGATGAGATCAGACCTGGCCTTCACAAGGTTTCAAAG CTATTGCGTGGAGATTCTGGGATGTTTTTCACCAATTTGTCTAAGGAAGAAEST: gi|213597447|gb|DB962525.1|DB962525
genomic: GTCGCTCCGCTTCAGATGAGATCAGACCTGGCCTTCACAAGGTTTCAAAGgttgcatatc ... ttttttgtagCTATTGCGTGGAGATTCTGGGATGTTTTTCACCAATTTGTCTAAGGAAGAA
EST: GTCGCTCCGCTTCAGATGAGATCAGACCTGGCCTTCACAAGGTTTCAAAG CTATTGCGTGGAGATTCTGGGATGTTTTTCACCAATTTGTCTAAGGAAGAA
genomic: GTCGCTCCGCTTCAGATGAGATCAGACCTGGCCTTCACAAGGTTTCAAAGgttgcatatc ... ttttttgtagCTATTGCGTGGAGATTCTGGGATGTTTTTCACCAATTTGTCTAAGGAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATAGCAGGTTCTTTCTGGGTTCTAACAAAGTAATGCAAGTTGCTTTAGGTCGCTCCGCTTCAGATGAGATCAGACCTGGCCTTCACAAGGTTTCAAAGgttgcatatcaatccctccctcccttttaccaactaccccattcaacattttctattttattttcttattatattctccttttttttttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA