Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCCTTCTTACTAGCACACATGTTGGAGAAATAATGGTCGCCATTGTTGTTGCAACCCTTGGATTGGTTCTTTTTGCACTGCTAATTGGTAATATGCAGgtaattaaagtatgcatgccacttcatttaactatatttctcgatgttacaatgtatattacccacaattctattgtgtgtgtgtaatgtaaagtaggaa...

Basic information

species Glycine max
transcript GLYMA13G39960.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G39960.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0004g02670.t01 (Vitis vinifera), 5'ss of exon 6
AGGCCTTCTTACTAGCACACATGTTGGAGAAATAATGGTCGCCATTGTTGTTGCAACCCTTGGATTGGTTCTTTTTGCACTGCTAATTGGTAATATGCAGgtaa--ttaaagtatgcatgccacttcatttaactatatttctcgatgttacaatgtatattacccacaattctattgtgtgtgtgtaatgtaaagtaggaa-
|   |||   || |||||  ||||||||||||| ||  | |||||  |  |||| || |||||||||||||| |||||  |||| |||||||||||||| ||||  |  || ||   ||  ||  | ||   ||| | | | |   ||||  | | |  |  |   |  ||   |        | ||  |      |   |  
AAATCTTTCCACAAGCACCTATGTTGGAGAAATTATTTTTGCCATCATAATTGCTACTCTTGGATTGGTTCTCTTTGCGTTGCTCATTGGTAATATGCAAgtaagttcgaaatacaaatctcaacttat---actttctgtgttattgttggagttttaagaatttaggatcagagaagactggcgttttcccttctcttaga